miRNA display CGI


Results 21 - 40 of 241 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28764 3' -54.6 NC_006146.1 + 144657 0.78 0.382458
Target:  5'- -cGGGGCcucgGGGAGGGAgagaGGAGGGGGa -3'
miRNA:   3'- gaCCCCGa---CCCUUUCUa---CCUUUCCCg -5'
28764 3' -54.6 NC_006146.1 + 141579 0.78 0.382458
Target:  5'- -cGGGGCcucgGGGAGGGAgagaGGAGGGGGa -3'
miRNA:   3'- gaCCCCGa---CCCUUUCUa---CCUUUCCCg -5'
28764 3' -54.6 NC_006146.1 + 153890 0.78 0.382458
Target:  5'- -cGGGGCcucgGGGAGGGAgagaGGAGGGGGa -3'
miRNA:   3'- gaCCCCGa---CCCUUUCUa---CCUUUCCCg -5'
28764 3' -54.6 NC_006146.1 + 156968 0.78 0.382458
Target:  5'- -cGGGGCcucgGGGAGGGAgagaGGAGGGGGa -3'
miRNA:   3'- gaCCCCGa---CCCUUUCUa---CCUUUCCCg -5'
28764 3' -54.6 NC_006146.1 + 26165 0.77 0.415879
Target:  5'- -gGGGGCUuaagcggccuggaGGGGAuuAGGUcGGAGGGGGCg -3'
miRNA:   3'- gaCCCCGA-------------CCCUU--UCUA-CCUUUCCCG- -5'
28764 3' -54.6 NC_006146.1 + 55025 0.77 0.41676
Target:  5'- -gGGGGC-GGGcgGGAUGGGGgucGGGGCc -3'
miRNA:   3'- gaCCCCGaCCCuuUCUACCUU---UCCCG- -5'
28764 3' -54.6 NC_006146.1 + 84933 0.77 0.425624
Target:  5'- -aGGaGGUUGGGAcGGAggcgccucgcuUGGggGGGGCa -3'
miRNA:   3'- gaCC-CCGACCCUuUCU-----------ACCuuUCCCG- -5'
28764 3' -54.6 NC_006146.1 + 81654 0.76 0.452875
Target:  5'- uUGGGGCUcGGAGGGugccgGGGAAGcGGCg -3'
miRNA:   3'- gACCCCGAcCCUUUCua---CCUUUC-CCG- -5'
28764 3' -54.6 NC_006146.1 + 60127 0.76 0.471561
Target:  5'- -aGGGGCcggGGGAGGGAccUGGuGGGGGGUg -3'
miRNA:   3'- gaCCCCGa--CCCUUUCU--ACC-UUUCCCG- -5'
28764 3' -54.6 NC_006146.1 + 14526 0.76 0.490629
Target:  5'- aUGGGGCU-GGAGAGccUGGAccGGGCc -3'
miRNA:   3'- gACCCCGAcCCUUUCu-ACCUuuCCCG- -5'
28764 3' -54.6 NC_006146.1 + 51876 0.76 0.500297
Target:  5'- aUGGGGaugaagaGGGGAGGGUGGAGgcugcgucggcgGGGGCc -3'
miRNA:   3'- gACCCCga-----CCCUUUCUACCUU------------UCCCG- -5'
28764 3' -54.6 NC_006146.1 + 92309 0.75 0.529781
Target:  5'- cCUGGGGCUGcugcuGGggGGcgGGcccggccuGGGGCa -3'
miRNA:   3'- -GACCCCGAC-----CCuuUCuaCCuu------UCCCG- -5'
28764 3' -54.6 NC_006146.1 + 11803 0.75 0.538753
Target:  5'- -aGGGGCUGGGGAcccugcaGGAggGGAAGGuGGg -3'
miRNA:   3'- gaCCCCGACCCUU-------UCUa-CCUUUC-CCg -5'
28764 3' -54.6 NC_006146.1 + 157113 0.74 0.559878
Target:  5'- -gGGGGCcgGGGAGGGAggcgGGGAGGacaGGCc -3'
miRNA:   3'- gaCCCCGa-CCCUUUCUa---CCUUUC---CCG- -5'
28764 3' -54.6 NC_006146.1 + 141723 0.74 0.559878
Target:  5'- -gGGGGCcgGGGAGGGAggcgGGGAGGacaGGCc -3'
miRNA:   3'- gaCCCCGa-CCCUUUCUa---CCUUUC---CCG- -5'
28764 3' -54.6 NC_006146.1 + 150957 0.74 0.559878
Target:  5'- -gGGGGCcgGGGAGGGAggcgGGGAGGacaGGCc -3'
miRNA:   3'- gaCCCCGa-CCCUUUCUa---CCUUUC---CCG- -5'
28764 3' -54.6 NC_006146.1 + 144801 0.74 0.559878
Target:  5'- -gGGGGCcgGGGAGGGAggcgGGGAGGacaGGCc -3'
miRNA:   3'- gaCCCCGa-CCCUUUCUa---CCUUUC---CCG- -5'
28764 3' -54.6 NC_006146.1 + 154035 0.74 0.559878
Target:  5'- -gGGGGCcgGGGAGGGAggcgGGGAGGacaGGCc -3'
miRNA:   3'- gaCCCCGa-CCCUUUCUa---CCUUUC---CCG- -5'
28764 3' -54.6 NC_006146.1 + 147879 0.74 0.559878
Target:  5'- -gGGGGCcgGGGAGGGAggcgGGGAGGacaGGCc -3'
miRNA:   3'- gaCCCCGa-CCCUUUCUa---CCUUUC---CCG- -5'
28764 3' -54.6 NC_006146.1 + 92099 0.74 0.580207
Target:  5'- cCUGGGGCUGcugcuGGggGGcgGGcccggccuGGGGCu -3'
miRNA:   3'- -GACCCCGAC-----CCuuUCuaCCuu------UCCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.