miRNA display CGI


Results 1 - 20 of 241 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28764 3' -54.6 NC_006146.1 + 132601 1.11 0.003198
Target:  5'- uCUGGGGCUGGGAAAGAUGGAAAGGGCc -3'
miRNA:   3'- -GACCCCGACCCUUUCUACCUUUCCCG- -5'
28764 3' -54.6 NC_006146.1 + 144506 0.88 0.103471
Target:  5'- cCUGGGGUggccgGGGAGGGGUGGGGAGuGGCc -3'
miRNA:   3'- -GACCCCGa----CCCUUUCUACCUUUC-CCG- -5'
28764 3' -54.6 NC_006146.1 + 147584 0.88 0.103471
Target:  5'- cCUGGGGUggccgGGGAGGGGUGGGGAGuGGCc -3'
miRNA:   3'- -GACCCCGa----CCCUUUCUACCUUUC-CCG- -5'
28764 3' -54.6 NC_006146.1 + 150662 0.88 0.103471
Target:  5'- cCUGGGGUggccgGGGAGGGGUGGGGAGuGGCc -3'
miRNA:   3'- -GACCCCGa----CCCUUUCUACCUUUC-CCG- -5'
28764 3' -54.6 NC_006146.1 + 153739 0.88 0.103471
Target:  5'- cCUGGGGUggccgGGGAGGGGUGGGGAGuGGCc -3'
miRNA:   3'- -GACCCCGa----CCCUUUCUACCUUUC-CCG- -5'
28764 3' -54.6 NC_006146.1 + 141428 0.88 0.103471
Target:  5'- cCUGGGGUggccgGGGAGGGGUGGGGAGuGGCc -3'
miRNA:   3'- -GACCCCGa----CCCUUUCUACCUUUC-CCG- -5'
28764 3' -54.6 NC_006146.1 + 156817 0.88 0.103471
Target:  5'- cCUGGGGUggccgGGGAGGGGUGGGGAGuGGCc -3'
miRNA:   3'- -GACCCCGa----CCCUUUCUACCUUUC-CCG- -5'
28764 3' -54.6 NC_006146.1 + 3782 0.82 0.229159
Target:  5'- -cGGGGg-GGGggGGggGGggGGGGCa -3'
miRNA:   3'- gaCCCCgaCCCuuUCuaCCuuUCCCG- -5'
28764 3' -54.6 NC_006146.1 + 131491 0.81 0.258738
Target:  5'- uCUGGGGUgccaGGGAucGAccgGGAAAGGGCc -3'
miRNA:   3'- -GACCCCGa---CCCUuuCUa--CCUUUCCCG- -5'
28764 3' -54.6 NC_006146.1 + 33233 0.8 0.27794
Target:  5'- aUGGGGCUGGGGuuccGggGGugGGGGCu -3'
miRNA:   3'- gACCCCGACCCUuu--CuaCCuuUCCCG- -5'
28764 3' -54.6 NC_006146.1 + 157233 0.79 0.342306
Target:  5'- aCUGGGGUggagGGGGAAGAggGGAgGAGGGa -3'
miRNA:   3'- -GACCCCGa---CCCUUUCUa-CCU-UUCCCg -5'
28764 3' -54.6 NC_006146.1 + 154155 0.79 0.342306
Target:  5'- aCUGGGGUggagGGGGAAGAggGGAgGAGGGa -3'
miRNA:   3'- -GACCCCGa---CCCUUUCUa-CCU-UUCCCg -5'
28764 3' -54.6 NC_006146.1 + 147999 0.79 0.342306
Target:  5'- aCUGGGGUggagGGGGAAGAggGGAgGAGGGa -3'
miRNA:   3'- -GACCCCGa---CCCUUUCUa-CCU-UUCCCg -5'
28764 3' -54.6 NC_006146.1 + 144921 0.79 0.342306
Target:  5'- aCUGGGGUggagGGGGAAGAggGGAgGAGGGa -3'
miRNA:   3'- -GACCCCGa---CCCUUUCUa-CCU-UUCCCg -5'
28764 3' -54.6 NC_006146.1 + 141843 0.79 0.342306
Target:  5'- aCUGGGGUggagGGGGAAGAggGGAgGAGGGa -3'
miRNA:   3'- -GACCCCGa---CCCUUUCUa-CCU-UUCCCg -5'
28764 3' -54.6 NC_006146.1 + 151077 0.79 0.342306
Target:  5'- aCUGGGGUggagGGGGAAGAggGGAgGAGGGa -3'
miRNA:   3'- -GACCCCGa---CCCUUUCUa-CCU-UUCCCg -5'
28764 3' -54.6 NC_006146.1 + 39526 0.78 0.357995
Target:  5'- gCUGauGGGCUGGGGGAGgcGGcgcAAGGGCu -3'
miRNA:   3'- -GAC--CCCGACCCUUUCuaCCu--UUCCCG- -5'
28764 3' -54.6 NC_006146.1 + 49593 0.78 0.371722
Target:  5'- gUGGGGCUGuGGAuGGuGUGGAacacaaucuguccaGAGGGCa -3'
miRNA:   3'- gACCCCGAC-CCUuUC-UACCU--------------UUCCCG- -5'
28764 3' -54.6 NC_006146.1 + 141579 0.78 0.382458
Target:  5'- -cGGGGCcucgGGGAGGGAgagaGGAGGGGGa -3'
miRNA:   3'- gaCCCCGa---CCCUUUCUa---CCUUUCCCg -5'
28764 3' -54.6 NC_006146.1 + 147734 0.78 0.382458
Target:  5'- -cGGGGCcucgGGGAGGGAgagaGGAGGGGGa -3'
miRNA:   3'- gaCCCCGa---CCCUUUCUa---CCUUUCCCg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.