miRNA display CGI


Results 1 - 20 of 241 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28764 3' -54.6 NC_006146.1 + 66482 0.66 0.954376
Target:  5'- gUGGGGCaUGGGGAGGcUGGugcugacggauuuuGGCa -3'
miRNA:   3'- gACCCCG-ACCCUUUCuACCuuuc----------CCG- -5'
28764 3' -54.6 NC_006146.1 + 69576 0.66 0.94008
Target:  5'- uCUGGug--GGGGAAGAUGGccagguccuGGGGCa -3'
miRNA:   3'- -GACCccgaCCCUUUCUACCuu-------UCCCG- -5'
28764 3' -54.6 NC_006146.1 + 159907 0.66 0.94008
Target:  5'- -cGGGGCccucGAAGAUGG--GGGGCa -3'
miRNA:   3'- gaCCCCGacccUUUCUACCuuUCCCG- -5'
28764 3' -54.6 NC_006146.1 + 169295 0.66 0.94008
Target:  5'- -cGGGGUcccGGGgcGGG-GGGucGGGCg -3'
miRNA:   3'- gaCCCCGa--CCCuuUCUaCCUuuCCCG- -5'
28764 3' -54.6 NC_006146.1 + 41454 0.66 0.956702
Target:  5'- uCUGGGGCUGGccugucuggacguGAGcuucgugcAGAUGcGGGaguuuguggucuGGGGCa -3'
miRNA:   3'- -GACCCCGACC-------------CUU--------UCUAC-CUU------------UCCCG- -5'
28764 3' -54.6 NC_006146.1 + 167431 0.66 0.94008
Target:  5'- -cGGGGUcccGGGgcGGG-GGGucGGGCg -3'
miRNA:   3'- gaCCCCGa--CCCuuUCUaCCUuuCCCG- -5'
28764 3' -54.6 NC_006146.1 + 168363 0.66 0.94008
Target:  5'- -cGGGGUcccGGGgcGGG-GGGucGGGCg -3'
miRNA:   3'- gaCCCCGa--CCCuuUCUaCCUuuCCCG- -5'
28764 3' -54.6 NC_006146.1 + 162391 0.66 0.939606
Target:  5'- -gGGGGCuuugcccUGGGAGuaacaaguGGUGGGcacGGGCu -3'
miRNA:   3'- gaCCCCG-------ACCCUUu-------CUACCUuu-CCCG- -5'
28764 3' -54.6 NC_006146.1 + 24199 0.66 0.94008
Target:  5'- -gGaGGGCUGGGccugcGAGGuucuguUGGGGccGGGGCc -3'
miRNA:   3'- gaC-CCCGACCC-----UUUCu-----ACCUU--UCCCG- -5'
28764 3' -54.6 NC_006146.1 + 133491 0.66 0.949051
Target:  5'- -cGGGGUgaaacaGGGAGGGuucgcgGGGcuuGGGGCc -3'
miRNA:   3'- gaCCCCGa-----CCCUUUCua----CCUu--UCCCG- -5'
28764 3' -54.6 NC_006146.1 + 114436 0.66 0.953183
Target:  5'- gCUGGaGCUGGGGAucuucGGAcuUGGAGAucuGGCc -3'
miRNA:   3'- -GACCcCGACCCUU-----UCU--ACCUUUc--CCG- -5'
28764 3' -54.6 NC_006146.1 + 157639 0.66 0.957082
Target:  5'- uCUGGGGCgccgguccccUGGuucccccuGGAGGAcagaGAGAGGGCa -3'
miRNA:   3'- -GACCCCG----------ACC--------CUUUCUac--CUUUCCCG- -5'
28764 3' -54.6 NC_006146.1 + 128 0.66 0.957082
Target:  5'- -aGGGGCUucgucacgcaaGGGu--GAUuucGGAGAGGGg -3'
miRNA:   3'- gaCCCCGA-----------CCCuuuCUA---CCUUUCCCg -5'
28764 3' -54.6 NC_006146.1 + 1027 0.66 0.957082
Target:  5'- -aGGGGCUucgucacgcaaGGGu--GAUuuaGGAGAGGGg -3'
miRNA:   3'- gaCCCCGA-----------CCCuuuCUA---CCUUUCCCg -5'
28764 3' -54.6 NC_006146.1 + 1928 0.66 0.957082
Target:  5'- -aGGGGCUucgucacgcaaGGGu--GAUuucGGAGAGGGg -3'
miRNA:   3'- gaCCCCGA-----------CCCuuuCUA---CCUUUCCCg -5'
28764 3' -54.6 NC_006146.1 + 2860 0.66 0.957082
Target:  5'- -aGGGGCUucgucacgcaaGGGu--GAUuucGGAGAGGGg -3'
miRNA:   3'- gaCCCCGA-----------CCCuuuCUA---CCUUUCCCg -5'
28764 3' -54.6 NC_006146.1 + 2924 0.66 0.957082
Target:  5'- -aGGGGCUucgucacgcaaGGGu--GAUuuaGGAGAGGGg -3'
miRNA:   3'- gaCCCCGA-----------CCCuuuCUA---CCUUUCCCg -5'
28764 3' -54.6 NC_006146.1 + 43993 0.66 0.957082
Target:  5'- -aGGaGGCUGaguaggccGGAGguGGAugUGGGGAGGGUc -3'
miRNA:   3'- gaCC-CCGAC--------CCUU--UCU--ACCUUUCCCG- -5'
28764 3' -54.6 NC_006146.1 + 81692 0.66 0.957082
Target:  5'- uUGGGGaaacauCUGGGGAAGuccccaGUGGc--GGGCc -3'
miRNA:   3'- gACCCC------GACCCUUUC------UACCuuuCCCG- -5'
28764 3' -54.6 NC_006146.1 + 122773 0.66 0.957082
Target:  5'- -gGGGGCUGGccGAAcuccaAGAgaaGAGAcGGGCg -3'
miRNA:   3'- gaCCCCGACC--CUU-----UCUac-CUUU-CCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.