miRNA display CGI


Results 1 - 20 of 241 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28764 3' -54.6 NC_006146.1 + 28 0.72 0.693095
Target:  5'- -aGGGGCcGGGAuGGAUGuuGGGGGa -3'
miRNA:   3'- gaCCCCGaCCCUuUCUACcuUUCCCg -5'
28764 3' -54.6 NC_006146.1 + 64 0.69 0.850679
Target:  5'- -aGGGGCUucgucacgcaaGGGu--GAUuucgGGGAGGGGCu -3'
miRNA:   3'- gaCCCCGA-----------CCCuuuCUA----CCUUUCCCG- -5'
28764 3' -54.6 NC_006146.1 + 128 0.66 0.957082
Target:  5'- -aGGGGCUucgucacgcaaGGGu--GAUuucGGAGAGGGg -3'
miRNA:   3'- gaCCCCGA-----------CCCuuuCUA---CCUUUCCCg -5'
28764 3' -54.6 NC_006146.1 + 1027 0.66 0.957082
Target:  5'- -aGGGGCUucgucacgcaaGGGu--GAUuuaGGAGAGGGg -3'
miRNA:   3'- gaCCCCGA-----------CCCuuuCUA---CCUUUCCCg -5'
28764 3' -54.6 NC_006146.1 + 1928 0.66 0.957082
Target:  5'- -aGGGGCUucgucacgcaaGGGu--GAUuucGGAGAGGGg -3'
miRNA:   3'- gaCCCCGA-----------CCCuuuCUA---CCUUUCCCg -5'
28764 3' -54.6 NC_006146.1 + 2860 0.66 0.957082
Target:  5'- -aGGGGCUucgucacgcaaGGGu--GAUuucGGAGAGGGg -3'
miRNA:   3'- gaCCCCGA-----------CCCuuuCUA---CCUUUCCCg -5'
28764 3' -54.6 NC_006146.1 + 2924 0.66 0.957082
Target:  5'- -aGGGGCUucgucacgcaaGGGu--GAUuuaGGAGAGGGg -3'
miRNA:   3'- gaCCCCGA-----------CCCuuuCUA---CCUUUCCCg -5'
28764 3' -54.6 NC_006146.1 + 3782 0.82 0.229159
Target:  5'- -cGGGGg-GGGggGGggGGggGGGGCa -3'
miRNA:   3'- gaCCCCgaCCCuuUCuaCCuuUCCCG- -5'
28764 3' -54.6 NC_006146.1 + 4479 0.66 0.949051
Target:  5'- -gGGGGCUGGuuacgugucuuguGGAGAUGGcacuggcgggccagcGGGGGGUg -3'
miRNA:   3'- gaCCCCGACCc------------UUUCUACC---------------UUUCCCG- -5'
28764 3' -54.6 NC_006146.1 + 5202 0.66 0.953183
Target:  5'- cCUGGGcCUGGGGGAGcu---AGGGGUg -3'
miRNA:   3'- -GACCCcGACCCUUUCuaccuUUCCCG- -5'
28764 3' -54.6 NC_006146.1 + 6079 0.69 0.850679
Target:  5'- -aGGGaGaUGGGGGAGAUGGAGacggaggaaauGGaGGCa -3'
miRNA:   3'- gaCCC-CgACCCUUUCUACCUU-----------UC-CCG- -5'
28764 3' -54.6 NC_006146.1 + 6388 0.66 0.944685
Target:  5'- -cGGGGCgGuGGAAAGccacGGGAAGGaGUu -3'
miRNA:   3'- gaCCCCGaC-CCUUUCua--CCUUUCC-CG- -5'
28764 3' -54.6 NC_006146.1 + 11803 0.75 0.538753
Target:  5'- -aGGGGCUGGGGAcccugcaGGAggGGAAGGuGGg -3'
miRNA:   3'- gaCCCCGACCCUU-------UCUa-CCUUUC-CCg -5'
28764 3' -54.6 NC_006146.1 + 12636 0.73 0.631562
Target:  5'- -cGGGGCUGGGccAGAguccccccgagUGGcucAAGGGCc -3'
miRNA:   3'- gaCCCCGACCCuuUCU-----------ACCu--UUCCCG- -5'
28764 3' -54.6 NC_006146.1 + 12860 0.71 0.74303
Target:  5'- cCUGGGGC-GaGGcuGGGUGGcu-GGGCa -3'
miRNA:   3'- -GACCCCGaC-CCuuUCUACCuuuCCCG- -5'
28764 3' -54.6 NC_006146.1 + 14009 0.68 0.894567
Target:  5'- --cGGGCUGGuGcuGGAaGGcGGAGGGCa -3'
miRNA:   3'- gacCCCGACC-CuuUCUaCC-UUUCCCG- -5'
28764 3' -54.6 NC_006146.1 + 14526 0.76 0.490629
Target:  5'- aUGGGGCU-GGAGAGccUGGAccGGGCc -3'
miRNA:   3'- gACCCCGAcCCUUUCu-ACCUuuCCCG- -5'
28764 3' -54.6 NC_006146.1 + 14790 0.7 0.800507
Target:  5'- uUGGcGGCUgagGGGAAGGAgaggccggccgggccGGAGgAGGGCa -3'
miRNA:   3'- gACC-CCGA---CCCUUUCUa--------------CCUU-UCCCG- -5'
28764 3' -54.6 NC_006146.1 + 14848 0.7 0.799606
Target:  5'- -cGGGGCcGcGGGAGGcc-GAGGGGGCa -3'
miRNA:   3'- gaCCCCGaC-CCUUUCuacCUUUCCCG- -5'
28764 3' -54.6 NC_006146.1 + 18855 0.68 0.901094
Target:  5'- -cGGGcGCUGccGGGGuGGUGGAcgugcGGGGGCc -3'
miRNA:   3'- gaCCC-CGAC--CCUUuCUACCU-----UUCCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.