miRNA display CGI


Results 1 - 20 of 241 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28764 3' -54.6 NC_006146.1 + 131491 0.81 0.258738
Target:  5'- uCUGGGGUgccaGGGAucGAccgGGAAAGGGCc -3'
miRNA:   3'- -GACCCCGa---CCCUuuCUa--CCUUUCCCG- -5'
28764 3' -54.6 NC_006146.1 + 33322 0.73 0.66244
Target:  5'- cCUGGGGCUccGGGGuccGGGUGcuccGGGGCa -3'
miRNA:   3'- -GACCCCGA--CCCUu--UCUACcuu-UCCCG- -5'
28764 3' -54.6 NC_006146.1 + 33475 0.72 0.672695
Target:  5'- -gGGGGUcGGGAA----GGGAGGGGCg -3'
miRNA:   3'- gaCCCCGaCCCUUucuaCCUUUCCCG- -5'
28764 3' -54.6 NC_006146.1 + 41454 0.66 0.956702
Target:  5'- uCUGGGGCUGGccugucuggacguGAGcuucgugcAGAUGcGGGaguuuguggucuGGGGCa -3'
miRNA:   3'- -GACCCCGACC-------------CUU--------UCUAC-CUU------------UCCCG- -5'
28764 3' -54.6 NC_006146.1 + 90202 0.74 0.590431
Target:  5'- -gGGGGCagagGGGGAAGA-GGAGGaGGCg -3'
miRNA:   3'- gaCCCCGa---CCCUUUCUaCCUUUcCCG- -5'
28764 3' -54.6 NC_006146.1 + 166704 0.74 0.590431
Target:  5'- -cGGGGCaaUGGGAGggGGGUGuGAGGGGUu -3'
miRNA:   3'- gaCCCCG--ACCCUU--UCUACcUUUCCCG- -5'
28764 3' -54.6 NC_006146.1 + 57040 0.74 0.600686
Target:  5'- -cGGGGCgaagccgccaGGGuuGAGGcgGGAGGGGGCc -3'
miRNA:   3'- gaCCCCGa---------CCC--UUUCuaCCUUUCCCG- -5'
28764 3' -54.6 NC_006146.1 + 167611 0.73 0.610965
Target:  5'- -gGGGGCcucgGGGgcGGA-GGggGGGGUc -3'
miRNA:   3'- gaCCCCGa---CCCuuUCUaCCuuUCCCG- -5'
28764 3' -54.6 NC_006146.1 + 170406 0.73 0.610965
Target:  5'- -gGGGGCcucgGGGgcGGA-GGggGGGGUc -3'
miRNA:   3'- gaCCCCGa---CCCuuUCUaCCuuUCCCG- -5'
28764 3' -54.6 NC_006146.1 + 51513 0.73 0.652161
Target:  5'- gUGGGGuCUGGcGggGGuuUGGGAGuuGGGCu -3'
miRNA:   3'- gACCCC-GACC-CuuUCu-ACCUUU--CCCG- -5'
28764 3' -54.6 NC_006146.1 + 33831 0.73 0.621259
Target:  5'- -cGGGGgUGGGGGA---GGGAGGGGUg -3'
miRNA:   3'- gaCCCCgACCCUUUcuaCCUUUCCCG- -5'
28764 3' -54.6 NC_006146.1 + 169475 0.73 0.610965
Target:  5'- -gGGGGCcucgGGGgcGGA-GGggGGGGUc -3'
miRNA:   3'- gaCCCCGa---CCCuuUCUaCCuuUCCCG- -5'
28764 3' -54.6 NC_006146.1 + 55025 0.77 0.41676
Target:  5'- -gGGGGC-GGGcgGGAUGGGGgucGGGGCc -3'
miRNA:   3'- gaCCCCGaCCCuuUCUACCUU---UCCCG- -5'
28764 3' -54.6 NC_006146.1 + 85646 0.73 0.621259
Target:  5'- -aGGGGCUgguuggcccacGGGGAcccuGGUGGAugaAAGGGCc -3'
miRNA:   3'- gaCCCCGA-----------CCCUUu---CUACCU---UUCCCG- -5'
28764 3' -54.6 NC_006146.1 + 60127 0.76 0.471561
Target:  5'- -aGGGGCcggGGGAGGGAccUGGuGGGGGGUg -3'
miRNA:   3'- gaCCCCGa--CCCUUUCU--ACC-UUUCCCG- -5'
28764 3' -54.6 NC_006146.1 + 168543 0.73 0.610965
Target:  5'- -gGGGGCcucgGGGgcGGA-GGggGGGGUc -3'
miRNA:   3'- gaCCCCGa---CCCuuUCUaCCuuUCCCG- -5'
28764 3' -54.6 NC_006146.1 + 153515 0.73 0.631562
Target:  5'- uCUGGaGGCUGuGGAuGGAgugGGGGgcguGGGGCu -3'
miRNA:   3'- -GACC-CCGAC-CCUuUCUa--CCUU----UCCCG- -5'
28764 3' -54.6 NC_006146.1 + 71891 0.73 0.666546
Target:  5'- gUGGGGCUGGuGGcguuaGGGGUGGuggacacugagguGGGGCu -3'
miRNA:   3'- gACCCCGACC-CU-----UUCUACCuu-----------UCCCG- -5'
28764 3' -54.6 NC_006146.1 + 51876 0.76 0.500297
Target:  5'- aUGGGGaugaagaGGGGAGGGUGGAGgcugcgucggcgGGGGCc -3'
miRNA:   3'- gACCCCga-----CCCUUUCUACCUU------------UCCCG- -5'
28764 3' -54.6 NC_006146.1 + 44316 0.74 0.600686
Target:  5'- -gGGGGCUGGGGcc-GUGGcagccGGGGGCu -3'
miRNA:   3'- gaCCCCGACCCUuucUACCu----UUCCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.