miRNA display CGI


Results 1 - 20 of 140 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28766 5' -57.8 NC_006146.1 + 123916 0.69 0.725412
Target:  5'- gGUCcGACgGGcgCAAuuccuGGCggcgGCCGGGCc -3'
miRNA:   3'- -CAGaCUGgCCa-GUUu----CCGa---CGGCCCG- -5'
28766 5' -57.8 NC_006146.1 + 40323 0.67 0.790935
Target:  5'- ---aGGCCGGagGAGGGUaGCCGuGGUg -3'
miRNA:   3'- cagaCUGGCCagUUUCCGaCGGC-CCG- -5'
28766 5' -57.8 NC_006146.1 + 81641 0.68 0.763511
Target:  5'- -gCUuGCCGGgacguuggggcUCGGAGGgUGCCGGGg -3'
miRNA:   3'- caGAcUGGCC-----------AGUUUCCgACGGCCCg -5'
28766 5' -57.8 NC_006146.1 + 39853 0.68 0.763511
Target:  5'- ---gGGCCGG-CGGGGGCUGugugcCCGGGg -3'
miRNA:   3'- cagaCUGGCCaGUUUCCGAC-----GGCCCg -5'
28766 5' -57.8 NC_006146.1 + 24099 0.68 0.763511
Target:  5'- -cCUGggacGCgGGUCGAGGGCggcuggcaCCGGGCc -3'
miRNA:   3'- caGAC----UGgCCAGUUUCCGac------GGCCCG- -5'
28766 5' -57.8 NC_006146.1 + 59317 0.68 0.763511
Target:  5'- -cCUGGCUGGcCgAGAGGCUGgCGGuGUu -3'
miRNA:   3'- caGACUGGCCaG-UUUCCGACgGCC-CG- -5'
28766 5' -57.8 NC_006146.1 + 23474 0.68 0.763511
Target:  5'- -cCUGGCCguGGcCAGguacGGGCUGgUGGGCu -3'
miRNA:   3'- caGACUGG--CCaGUU----UCCGACgGCCCG- -5'
28766 5' -57.8 NC_006146.1 + 41850 0.68 0.744652
Target:  5'- uGUCUGcGCCGG-CGucuGGGCccaGCuCGGGCu -3'
miRNA:   3'- -CAGAC-UGGCCaGUu--UCCGa--CG-GCCCG- -5'
28766 5' -57.8 NC_006146.1 + 13110 0.68 0.735075
Target:  5'- -cCUGGCCcuguuuguGGaCGGGGGCUcCCGGGCc -3'
miRNA:   3'- caGACUGG--------CCaGUUUCCGAcGGCCCG- -5'
28766 5' -57.8 NC_006146.1 + 43916 0.67 0.790935
Target:  5'- cUCcggGACCGcGUCGcccGGCaGUCGGGCg -3'
miRNA:   3'- cAGa--CUGGC-CAGUuu-CCGaCGGCCCG- -5'
28766 5' -57.8 NC_006146.1 + 112512 0.67 0.790935
Target:  5'- gGUCcaggGGCCGGUgGAGGGC--CUGGGUc -3'
miRNA:   3'- -CAGa---CUGGCCAgUUUCCGacGGCCCG- -5'
28766 5' -57.8 NC_006146.1 + 123023 0.67 0.808541
Target:  5'- -gCUGACCGaGgCcGAGGCggcccagGuCCGGGCg -3'
miRNA:   3'- caGACUGGC-CaGuUUCCGa------C-GGCCCG- -5'
28766 5' -57.8 NC_006146.1 + 33213 0.66 0.872196
Target:  5'- ---aGGCCGG--AGGGGgaGCCGGGa -3'
miRNA:   3'- cagaCUGGCCagUUUCCgaCGGCCCg -5'
28766 5' -57.8 NC_006146.1 + 40006 0.66 0.85741
Target:  5'- --gUGGCCGGUgugggcguagCAGGGGgcCUGCUGGGg -3'
miRNA:   3'- cagACUGGCCA----------GUUUCC--GACGGCCCg -5'
28766 5' -57.8 NC_006146.1 + 16189 0.66 0.849719
Target:  5'- -gCUGGCCGccCugguGGGCUGCaucuGGGCg -3'
miRNA:   3'- caGACUGGCcaGuu--UCCGACGg---CCCG- -5'
28766 5' -57.8 NC_006146.1 + 166099 0.66 0.841837
Target:  5'- ---gGAUCGGUU-GAGGCgccCCGGGCg -3'
miRNA:   3'- cagaCUGGCCAGuUUCCGac-GGCCCG- -5'
28766 5' -57.8 NC_006146.1 + 127580 0.66 0.841837
Target:  5'- -cCUGGgCGGcCGAGGccGCgccgGCCGGGUg -3'
miRNA:   3'- caGACUgGCCaGUUUC--CGa---CGGCCCG- -5'
28766 5' -57.8 NC_006146.1 + 115990 0.66 0.841837
Target:  5'- -aCUG-CCGGUCccuGAAGGCcgGCCagacGGCg -3'
miRNA:   3'- caGACuGGCCAG---UUUCCGa-CGGc---CCG- -5'
28766 5' -57.8 NC_006146.1 + 137178 0.67 0.817116
Target:  5'- ---gGACCGGagGAgcuccagaacggGGGUagGCCGGGCa -3'
miRNA:   3'- cagaCUGGCCagUU------------UCCGa-CGGCCCG- -5'
28766 5' -57.8 NC_006146.1 + 136991 0.67 0.817116
Target:  5'- ---gGACCGGagGAgcuccaggacggGGGUagGCCGGGCa -3'
miRNA:   3'- cagaCUGGCCagUU------------UCCGa-CGGCCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.