miRNA display CGI


Results 1 - 20 of 243 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28768 3' -59 NC_006146.1 + 13932 0.66 0.801368
Target:  5'- gGCGGGUgGGCCCgG-----GGGAGCCc -3'
miRNA:   3'- -UGUCCGgUCGGGgUcuagaUCCUCGG- -5'
28768 3' -59 NC_006146.1 + 52988 0.66 0.810064
Target:  5'- gGCGGGCgucucgaGGCCCCucuUCUGGcccuGGGCCu -3'
miRNA:   3'- -UGUCCGg------UCGGGGucuAGAUC----CUCGG- -5'
28768 3' -59 NC_006146.1 + 114320 0.66 0.773506
Target:  5'- gGCGGGCuCGGCgCCCGGccgcccCUgacggagguggacGGGGGCCu -3'
miRNA:   3'- -UGUCCG-GUCG-GGGUCua----GA-------------UCCUCGG- -5'
28768 3' -59 NC_006146.1 + 132539 0.66 0.774424
Target:  5'- uACGuGGCCucgaaGGCCUCGGGUC--GGAGCg -3'
miRNA:   3'- -UGU-CCGG-----UCGGGGUCUAGauCCUCGg -5'
28768 3' -59 NC_006146.1 + 128972 0.66 0.774424
Target:  5'- cACGGGCCucggguucuGCCUCAGcaaggGGGGGUCg -3'
miRNA:   3'- -UGUCCGGu--------CGGGGUCuaga-UCCUCGG- -5'
28768 3' -59 NC_006146.1 + 62851 0.66 0.779908
Target:  5'- cCAGGCCGGagguucucuucaCCAGuccGUCcAGGGGCCa -3'
miRNA:   3'- uGUCCGGUCgg----------GGUC---UAGaUCCUCGG- -5'
28768 3' -59 NC_006146.1 + 137804 0.66 0.782633
Target:  5'- gGC-GGCCAcccggcuGCCCCAGAgccgCaGGGccgAGCCa -3'
miRNA:   3'- -UGuCCGGU-------CGGGGUCUa---GaUCC---UCGG- -5'
28768 3' -59 NC_006146.1 + 123030 0.66 0.783539
Target:  5'- -gAGGCCgaGGCggCCCAGGUCcGGGcGCUg -3'
miRNA:   3'- ugUCCGG--UCG--GGGUCUAGaUCCuCGG- -5'
28768 3' -59 NC_006146.1 + 77751 0.66 0.787149
Target:  5'- cCAuGGCCAguuguaggguuuguuGCCCUGGAUCggAGGGGUg -3'
miRNA:   3'- uGU-CCGGU---------------CGGGGUCUAGa-UCCUCGg -5'
28768 3' -59 NC_006146.1 + 124129 0.66 0.791631
Target:  5'- gGCcGGCCAgccauccGCCCgGGGUC-GGGAGgCg -3'
miRNA:   3'- -UGuCCGGU-------CGGGgUCUAGaUCCUCgG- -5'
28768 3' -59 NC_006146.1 + 95633 0.66 0.797847
Target:  5'- aGCAGGUCuugggucaaaAGCCCCugccaugGGAUCUGgcauauguguagccGGGGCUa -3'
miRNA:   3'- -UGUCCGG----------UCGGGG-------UCUAGAU--------------CCUCGG- -5'
28768 3' -59 NC_006146.1 + 105699 0.66 0.810064
Target:  5'- cCGGGCUcccagGGcCCCCAGAgcgcCUAGG-GCUc -3'
miRNA:   3'- uGUCCGG-----UC-GGGGUCUa---GAUCCuCGG- -5'
28768 3' -59 NC_006146.1 + 43178 0.66 0.801368
Target:  5'- cCGGGcCCAGCCCCAucagCUccucgcGGGAGgCg -3'
miRNA:   3'- uGUCC-GGUCGGGGUcua-GA------UCCUCgG- -5'
28768 3' -59 NC_006146.1 + 144260 0.66 0.801368
Target:  5'- cGCAuGGCCugAGUCCCuacuUUUAGGGGCUc -3'
miRNA:   3'- -UGU-CCGG--UCGGGGucu-AGAUCCUCGG- -5'
28768 3' -59 NC_006146.1 + 147338 0.66 0.801368
Target:  5'- cGCAuGGCCugAGUCCCuacuUUUAGGGGCUc -3'
miRNA:   3'- -UGU-CCGG--UCGGGGucu-AGAUCCUCGG- -5'
28768 3' -59 NC_006146.1 + 150416 0.66 0.801368
Target:  5'- cGCAuGGCCugAGUCCCuacuUUUAGGGGCUc -3'
miRNA:   3'- -UGU-CCGG--UCGGGGucu-AGAUCCUCGG- -5'
28768 3' -59 NC_006146.1 + 153494 0.66 0.801368
Target:  5'- cGCAuGGCCugAGUCCCuacuUUUAGGGGCUc -3'
miRNA:   3'- -UGU-CCGG--UCGGGGucu-AGAUCCUCGG- -5'
28768 3' -59 NC_006146.1 + 156572 0.66 0.801368
Target:  5'- cGCAuGGCCugAGUCCCuacuUUUAGGGGCUc -3'
miRNA:   3'- -UGU-CCGG--UCGGGGucu-AGAUCCUCGG- -5'
28768 3' -59 NC_006146.1 + 134740 0.66 0.804864
Target:  5'- cCAGGCCAGCcaggccaacgcucguCCCAGAg-UGGGAuuuCCa -3'
miRNA:   3'- uGUCCGGUCG---------------GGGUCUagAUCCUc--GG- -5'
28768 3' -59 NC_006146.1 + 33189 0.66 0.809201
Target:  5'- gUAGGCCcgGGCaCCCccggggggaggccGGAgg-GGGAGCCg -3'
miRNA:   3'- uGUCCGG--UCG-GGG-------------UCUagaUCCUCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.