miRNA display CGI


Results 1 - 20 of 243 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28768 3' -59 NC_006146.1 + 65184 0.77 0.239418
Target:  5'- -gGGGCUcuuggAGCCCUAGGcgcUCUGGGGGCCc -3'
miRNA:   3'- ugUCCGG-----UCGGGGUCU---AGAUCCUCGG- -5'
28768 3' -59 NC_006146.1 + 15961 0.92 0.025083
Target:  5'- gGCAGGCCGGUCUCGGGUCUGGGGGUCu -3'
miRNA:   3'- -UGUCCGGUCGGGGUCUAGAUCCUCGG- -5'
28768 3' -59 NC_006146.1 + 12883 0.85 0.069232
Target:  5'- gGCAGGCCgGGUCUCGGGUCUGGGGGUCu -3'
miRNA:   3'- -UGUCCGG-UCGGGGUCUAGAUCCUCGG- -5'
28768 3' -59 NC_006146.1 + 169718 0.77 0.233787
Target:  5'- cACGGGUgGGCgCUCAGAUCggcgcggGGGAGCCc -3'
miRNA:   3'- -UGUCCGgUCG-GGGUCUAGa------UCCUCGG- -5'
28768 3' -59 NC_006146.1 + 15032 0.77 0.239418
Target:  5'- cCAGGCCcgGGcCCCCAGGUCUcGG-GCCa -3'
miRNA:   3'- uGUCCGG--UC-GGGGUCUAGAuCCuCGG- -5'
28768 3' -59 NC_006146.1 + 19038 0.85 0.069232
Target:  5'- gGCAGGCCgGGUCUCGGGUCUGGGGGUCu -3'
miRNA:   3'- -UGUCCGG-UCGGGGUCUAGAUCCUCGG- -5'
28768 3' -59 NC_006146.1 + 114221 0.77 0.21756
Target:  5'- aGCAgGGCCAGCCCCAGGgggcccggcaccUCaGGGAggGCCa -3'
miRNA:   3'- -UGU-CCGGUCGGGGUCU------------AGaUCCU--CGG- -5'
28768 3' -59 NC_006146.1 + 168786 0.77 0.233787
Target:  5'- cACGGGUgGGCgCUCAGAUCggcgcggGGGAGCCc -3'
miRNA:   3'- -UGUCCGgUCG-GGGUCUAGa------UCCUCGG- -5'
28768 3' -59 NC_006146.1 + 27344 0.77 0.239418
Target:  5'- cCAGGCCcgGGcCCCCAGGUCUcGG-GCCa -3'
miRNA:   3'- uGUCCGG--UC-GGGGUCUAGAuCCuCGG- -5'
28768 3' -59 NC_006146.1 + 131198 0.74 0.345397
Target:  5'- uGCAGGCCucuGCCuCCGGAgcggcgCUgcaggcccAGGAGCCc -3'
miRNA:   3'- -UGUCCGGu--CGG-GGUCUa-----GA--------UCCUCGG- -5'
28768 3' -59 NC_006146.1 + 52988 0.66 0.810064
Target:  5'- gGCGGGCgucucgaGGCCCCucuUCUGGcccuGGGCCu -3'
miRNA:   3'- -UGUCCGg------UCGGGGucuAGAUC----CUCGG- -5'
28768 3' -59 NC_006146.1 + 25194 0.85 0.069232
Target:  5'- gGCAGGCCgGGUCUCGGGUCUGGGGGUCu -3'
miRNA:   3'- -UGUCCGG-UCGGGGUCUAGAUCCUCGG- -5'
28768 3' -59 NC_006146.1 + 22116 0.85 0.069232
Target:  5'- gGCAGGCCgGGUCUCGGGUCUGGGGGUCu -3'
miRNA:   3'- -UGUCCGG-UCGGGGUCUAGAUCCUCGG- -5'
28768 3' -59 NC_006146.1 + 21188 0.77 0.239418
Target:  5'- cCAGGCCcgGGcCCCCAGGUCUcGG-GCCa -3'
miRNA:   3'- uGUCCGG--UC-GGGGUCUAGAuCCuCGG- -5'
28768 3' -59 NC_006146.1 + 24266 0.77 0.239418
Target:  5'- cCAGGCCcgGGcCCCCAGGUCUcGG-GCCa -3'
miRNA:   3'- uGUCCGG--UC-GGGGUCUAGAuCCuCGG- -5'
28768 3' -59 NC_006146.1 + 28272 0.85 0.069232
Target:  5'- gGCAGGCCgGGUCUCGGGUCUGGGGGUCu -3'
miRNA:   3'- -UGUCCGG-UCGGGGUCUAGAUCCUCGG- -5'
28768 3' -59 NC_006146.1 + 98984 0.74 0.33048
Target:  5'- cCAGGUCAGgCCCAGGUC-AGaGGCCg -3'
miRNA:   3'- uGUCCGGUCgGGGUCUAGaUCcUCGG- -5'
28768 3' -59 NC_006146.1 + 14365 0.73 0.376659
Target:  5'- gGCGGGCCugucagacAGCCCU--GUCUAGG-GCCg -3'
miRNA:   3'- -UGUCCGG--------UCGGGGucUAGAUCCuCGG- -5'
28768 3' -59 NC_006146.1 + 167854 0.77 0.233787
Target:  5'- cACGGGUgGGCgCUCAGAUCggcgcggGGGAGCCc -3'
miRNA:   3'- -UGUCCGgUCG-GGGUCUAGa------UCCUCGG- -5'
28768 3' -59 NC_006146.1 + 18110 0.77 0.239418
Target:  5'- cCAGGCCcgGGcCCCCAGGUCUcGG-GCCa -3'
miRNA:   3'- uGUCCGG--UC-GGGGUCUAGAuCCuCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.