miRNA display CGI


Results 1 - 20 of 243 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28768 3' -59 NC_006146.1 + 554 0.7 0.567837
Target:  5'- cGCGGGCCuccacacguGGCcuCCCAGGag-AGGGGCCg -3'
miRNA:   3'- -UGUCCGG---------UCG--GGGUCUagaUCCUCGG- -5'
28768 3' -59 NC_006146.1 + 714 0.72 0.426995
Target:  5'- cCAGGCCccGGCCCCGcc-CUcGGGAGCCc -3'
miRNA:   3'- uGUCCGG--UCGGGGUcuaGA-UCCUCGG- -5'
28768 3' -59 NC_006146.1 + 1485 0.7 0.567837
Target:  5'- cGCGGGCCuccacacguGGCcuCCCAGGag-AGGGGCCg -3'
miRNA:   3'- -UGUCCGG---------UCG--GGGUCUagaUCCUCGG- -5'
28768 3' -59 NC_006146.1 + 1645 0.72 0.426995
Target:  5'- cCAGGCCccGGCCCCGcc-CUcGGGAGCCc -3'
miRNA:   3'- uGUCCGG--UCGGGGUcuaGA-UCCUCGG- -5'
28768 3' -59 NC_006146.1 + 2417 0.7 0.567837
Target:  5'- cGCGGGCCuccacacguGGCcuCCCAGGag-AGGGGCCg -3'
miRNA:   3'- -UGUCCGG---------UCG--GGGUCUagaUCCUCGG- -5'
28768 3' -59 NC_006146.1 + 2577 0.72 0.426995
Target:  5'- cCAGGCCccGGCCCCGcc-CUcGGGAGCCc -3'
miRNA:   3'- uGUCCGG--UCGGGGUcuaGA-UCCUCGG- -5'
28768 3' -59 NC_006146.1 + 2766 0.67 0.746378
Target:  5'- cGCAGGCCcaAG-CCCGGAUgUcaGGGAagacGCCa -3'
miRNA:   3'- -UGUCCGG--UCgGGGUCUAgA--UCCU----CGG- -5'
28768 3' -59 NC_006146.1 + 2912 0.66 0.810064
Target:  5'- -aGGGCCugacGCCcaccauguuuaCCGGGgagCUGGGAGUCa -3'
miRNA:   3'- ugUCCGGu---CGG-----------GGUCUa--GAUCCUCGG- -5'
28768 3' -59 NC_006146.1 + 3349 0.7 0.567837
Target:  5'- cGCGGGCCuccacacguGGCcuCCCAGGag-AGGGGCCg -3'
miRNA:   3'- -UGUCCGG---------UCG--GGGUCUagaUCCUCGG- -5'
28768 3' -59 NC_006146.1 + 3509 0.72 0.426995
Target:  5'- cCAGGCCccGGCCCCGcc-CUcGGGAGCCc -3'
miRNA:   3'- uGUCCGG--UCGGGGUcuaGA-UCCUCGG- -5'
28768 3' -59 NC_006146.1 + 4935 0.71 0.509387
Target:  5'- gGguGGCCGugcucuguGCCCCGGGgaccAGGGGCCa -3'
miRNA:   3'- -UguCCGGU--------CGGGGUCUaga-UCCUCGG- -5'
28768 3' -59 NC_006146.1 + 5225 0.69 0.597723
Target:  5'- uGCAGguccuuGCCGGCCUCGGggCUGuGGGGUCc -3'
miRNA:   3'- -UGUC------CGGUCGGGGUCuaGAU-CCUCGG- -5'
28768 3' -59 NC_006146.1 + 6431 0.67 0.755835
Target:  5'- -aGGGCCaugugGGCCCUgGGGUCcauGGGGCCc -3'
miRNA:   3'- ugUCCGG-----UCGGGG-UCUAGau-CCUCGG- -5'
28768 3' -59 NC_006146.1 + 9007 0.67 0.746378
Target:  5'- cACGGGgCGuuGCCcaaaagggaagCCGGGUCUcccaGGGAGCCu -3'
miRNA:   3'- -UGUCCgGU--CGG-----------GGUCUAGA----UCCUCGG- -5'
28768 3' -59 NC_006146.1 + 9074 0.68 0.677962
Target:  5'- cACGGGgCguGGCCcaaaaggaaagCCGGGUCUcccaGGGAGCCu -3'
miRNA:   3'- -UGUCCgG--UCGG-----------GGUCUAGA----UCCUCGG- -5'
28768 3' -59 NC_006146.1 + 12728 0.69 0.601729
Target:  5'- -gGGGCCAGCaagcgagaccagCCCAGAggcccgagguuGGAGCCg -3'
miRNA:   3'- ugUCCGGUCG------------GGGUCUagau-------CCUCGG- -5'
28768 3' -59 NC_006146.1 + 12883 0.85 0.069232
Target:  5'- gGCAGGCCgGGUCUCGGGUCUGGGGGUCu -3'
miRNA:   3'- -UGUCCGG-UCGGGGUCUAGAUCCUCGG- -5'
28768 3' -59 NC_006146.1 + 13233 0.67 0.731049
Target:  5'- --cGGCCAGaCCCAGuUCUacaucagccugguccAGGGGCUg -3'
miRNA:   3'- uguCCGGUCgGGGUCuAGA---------------UCCUCGG- -5'
28768 3' -59 NC_006146.1 + 13932 0.66 0.801368
Target:  5'- gGCGGGUgGGCCCgG-----GGGAGCCc -3'
miRNA:   3'- -UGUCCGgUCGGGgUcuagaUCCUCGG- -5'
28768 3' -59 NC_006146.1 + 14365 0.73 0.376659
Target:  5'- gGCGGGCCugucagacAGCCCU--GUCUAGG-GCCg -3'
miRNA:   3'- -UGUCCGG--------UCGGGGucUAGAUCCuCGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.