miRNA display CGI


Results 41 - 60 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28769 3' -60.5 NC_006146.1 + 59358 0.72 0.409262
Target:  5'- aGCCUCUCaaagGCCUUGGCCuuuucguuGGUCAGgAGg -3'
miRNA:   3'- -CGGAGAGg---CGGAGCCGG--------UCGGUCaUC- -5'
28769 3' -60.5 NC_006146.1 + 61718 0.67 0.692307
Target:  5'- aGCC-CUCUGUCUgGGCCucagacuaagGGCCGGg-- -3'
miRNA:   3'- -CGGaGAGGCGGAgCCGG----------UCGGUCauc -5'
28769 3' -60.5 NC_006146.1 + 62836 0.67 0.692307
Target:  5'- cCCUggCCGCCgUGGCCAGgCCGG-AGg -3'
miRNA:   3'- cGGAgaGGCGGaGCCGGUC-GGUCaUC- -5'
28769 3' -60.5 NC_006146.1 + 63146 0.66 0.711692
Target:  5'- gGCCaUCUCCGCCUCGaCCAuUCucGUGGu -3'
miRNA:   3'- -CGG-AGAGGCGGAGCcGGUcGGu-CAUC- -5'
28769 3' -60.5 NC_006146.1 + 67215 0.71 0.443512
Target:  5'- gGCCgg-UCGCCU-GGCCGGCCAGg-- -3'
miRNA:   3'- -CGGagaGGCGGAgCCGGUCGGUCauc -5'
28769 3' -60.5 NC_006146.1 + 68091 0.66 0.738392
Target:  5'- aGCC-C-CCGCgCgauccaggugggCGGCCAGCCGGUc- -3'
miRNA:   3'- -CGGaGaGGCG-Ga-----------GCCGGUCGGUCAuc -5'
28769 3' -60.5 NC_006146.1 + 78941 0.68 0.593809
Target:  5'- uGCCUCcCCaGgCUCcuaaaaggggcaGGCCuGCCAGUAGa -3'
miRNA:   3'- -CGGAGaGG-CgGAG------------CCGGuCGGUCAUC- -5'
28769 3' -60.5 NC_006146.1 + 80271 0.67 0.692307
Target:  5'- cGCCUCccaaaccacccUCCcuuuuuaccacuGCCUCGGCCA-CCAG-AGg -3'
miRNA:   3'- -CGGAG-----------AGG------------CGGAGCCGGUcGGUCaUC- -5'
28769 3' -60.5 NC_006146.1 + 100736 0.66 0.721294
Target:  5'- gGCCUCgCCggccaccagcGCCcCGGCCaggAGCCAGgcGa -3'
miRNA:   3'- -CGGAGaGG----------CGGaGCCGG---UCGGUCauC- -5'
28769 3' -60.5 NC_006146.1 + 103670 0.71 0.425327
Target:  5'- aGCCUCcguggcuUCCuguGCCU-GGCCGGCCAGgcGa -3'
miRNA:   3'- -CGGAG-------AGG---CGGAgCCGGUCGGUCauC- -5'
28769 3' -60.5 NC_006146.1 + 104104 0.69 0.583989
Target:  5'- cGCCUCaugcgCCGCCUgGGCCcgguGuCCAGg-- -3'
miRNA:   3'- -CGGAGa----GGCGGAgCCGGu---C-GGUCauc -5'
28769 3' -60.5 NC_006146.1 + 105827 0.66 0.758905
Target:  5'- gGCCcCUCCuGCCcCGcGCC-GCCgAGUAGa -3'
miRNA:   3'- -CGGaGAGG-CGGaGC-CGGuCGG-UCAUC- -5'
28769 3' -60.5 NC_006146.1 + 106635 0.67 0.672735
Target:  5'- uGCCgCagCGCCUgcugCGGCCGGCUGGUcAGg -3'
miRNA:   3'- -CGGaGagGCGGA----GCCGGUCGGUCA-UC- -5'
28769 3' -60.5 NC_006146.1 + 106668 0.66 0.721294
Target:  5'- cCCUC-CCGCCcCGGCCcaGGCgCAGa-- -3'
miRNA:   3'- cGGAGaGGCGGaGCCGG--UCG-GUCauc -5'
28769 3' -60.5 NC_006146.1 + 107857 0.67 0.692307
Target:  5'- uGCgUCUCCGCuCUaGGCCAGUgGuGUAa -3'
miRNA:   3'- -CGgAGAGGCG-GAgCCGGUCGgU-CAUc -5'
28769 3' -60.5 NC_006146.1 + 110436 0.66 0.730825
Target:  5'- gGCCUCUcaCCGCUccccgCGGCCuGCCGc--- -3'
miRNA:   3'- -CGGAGA--GGCGGa----GCCGGuCGGUcauc -5'
28769 3' -60.5 NC_006146.1 + 110467 0.67 0.702027
Target:  5'- aGCUUCUCgGCCaUGGCCAGgaaGGUGa -3'
miRNA:   3'- -CGGAGAGgCGGaGCCGGUCgg-UCAUc -5'
28769 3' -60.5 NC_006146.1 + 111576 0.73 0.353466
Target:  5'- uGCCgUCaacaCCGCCagccucUCGGCCAGCCAGg-- -3'
miRNA:   3'- -CGG-AGa---GGCGG------AGCCGGUCGGUCauc -5'
28769 3' -60.5 NC_006146.1 + 115099 0.68 0.63328
Target:  5'- gGCCUCUuccaCCGCCccgagucgcUGGCCAGCgUGGUGGc -3'
miRNA:   3'- -CGGAGA----GGCGGa--------GCCGGUCG-GUCAUC- -5'
28769 3' -60.5 NC_006146.1 + 115137 0.66 0.730825
Target:  5'- nGCCUCgCUGCCccUGGCCcgccGCCGGgcGg -3'
miRNA:   3'- -CGGAGaGGCGGa-GCCGGu---CGGUCauC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.