miRNA display CGI


Results 1 - 20 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28769 3' -60.5 NC_006146.1 + 161003 0.68 0.623396
Target:  5'- cGCCUC-CUGCCU-GGCCGucaccGCCuuuGUGGg -3'
miRNA:   3'- -CGGAGaGGCGGAgCCGGU-----CGGu--CAUC- -5'
28769 3' -60.5 NC_006146.1 + 157161 0.67 0.653039
Target:  5'- cGgCUCUCCcgggcuGCCggggucccucCGGCCGGCCuGGUGGa -3'
miRNA:   3'- -CgGAGAGG------CGGa---------GCCGGUCGG-UCAUC- -5'
28769 3' -60.5 NC_006146.1 + 156891 0.71 0.433931
Target:  5'- uGCC-CUCCGCCUuccagcaccagccCGGCCgaGGCCugGGUGGc -3'
miRNA:   3'- -CGGaGAGGCGGA-------------GCCGG--UCGG--UCAUC- -5'
28769 3' -60.5 NC_006146.1 + 156094 0.67 0.653039
Target:  5'- cCCUcCUCCgGCC-CGGCCGGCCu---- -3'
miRNA:   3'- cGGA-GAGG-CGGaGCCGGUCGGucauc -5'
28769 3' -60.5 NC_006146.1 + 154083 0.67 0.653039
Target:  5'- cGgCUCUCCcgggcuGCCggggucccucCGGCCGGCCuGGUGGa -3'
miRNA:   3'- -CgGAGAGG------CGGa---------GCCGGUCGG-UCAUC- -5'
28769 3' -60.5 NC_006146.1 + 151005 0.67 0.653039
Target:  5'- cGgCUCUCCcgggcuGCCggggucccucCGGCCGGCCuGGUGGa -3'
miRNA:   3'- -CgGAGAGG------CGGa---------GCCGGUCGG-UCAUC- -5'
28769 3' -60.5 NC_006146.1 + 150202 0.72 0.392766
Target:  5'- aGCUUCUUaauggccuUGCgCUUGGCCAGCCAGgAGg -3'
miRNA:   3'- -CGGAGAG--------GCG-GAGCCGGUCGGUCaUC- -5'
28769 3' -60.5 NC_006146.1 + 147927 0.67 0.653039
Target:  5'- cGgCUCUCCcgggcuGCCggggucccucCGGCCGGCCuGGUGGa -3'
miRNA:   3'- -CgGAGAGG------CGGa---------GCCGGUCGG-UCAUC- -5'
28769 3' -60.5 NC_006146.1 + 146346 0.7 0.516482
Target:  5'- uGUCgCUCC-UCUUGGCCGGCCAGaAGa -3'
miRNA:   3'- -CGGaGAGGcGGAGCCGGUCGGUCaUC- -5'
28769 3' -60.5 NC_006146.1 + 144849 0.67 0.653039
Target:  5'- cGgCUCUCCcgggcuGCCggggucccucCGGCCGGCCuGGUGGa -3'
miRNA:   3'- -CgGAGAGG------CGGa---------GCCGGUCGG-UCAUC- -5'
28769 3' -60.5 NC_006146.1 + 141771 0.67 0.653039
Target:  5'- cGgCUCUCCcgggcuGCCggggucccucCGGCCGGCCuGGUGGa -3'
miRNA:   3'- -CgGAGAGG------CGGa---------GCCGGUCGG-UCAUC- -5'
28769 3' -60.5 NC_006146.1 + 137798 0.68 0.642176
Target:  5'- cGCCggaUCCGCUUCGgggguccGCCGGuCCGGUGc -3'
miRNA:   3'- -CGGag-AGGCGGAGC-------CGGUC-GGUCAUc -5'
28769 3' -60.5 NC_006146.1 + 129318 1.1 0.001005
Target:  5'- gGCCUCUCCGCCUCGGCCAGCCAGUAGg -3'
miRNA:   3'- -CGGAGAGGCGGAGCCGGUCGGUCAUC- -5'
28769 3' -60.5 NC_006146.1 + 126179 0.66 0.749639
Target:  5'- gGCCa--CCGCaUCaGGCCGGCCAGcGGg -3'
miRNA:   3'- -CGGagaGGCGgAG-CCGGUCGGUCaUC- -5'
28769 3' -60.5 NC_006146.1 + 124180 0.67 0.702027
Target:  5'- gGCCUCcgcCCGCCUCGGagccgccgCGGCCGa--- -3'
miRNA:   3'- -CGGAGa--GGCGGAGCCg-------GUCGGUcauc -5'
28769 3' -60.5 NC_006146.1 + 124117 0.73 0.368848
Target:  5'- uGCC-CUCgCGCCggcCGGCCAGCCAu--- -3'
miRNA:   3'- -CGGaGAG-GCGGa--GCCGGUCGGUcauc -5'
28769 3' -60.5 NC_006146.1 + 117869 0.7 0.516482
Target:  5'- aCCUCUCggcggcgGCCgCGGCCAGCCGcGUGa -3'
miRNA:   3'- cGGAGAGg------CGGaGCCGGUCGGU-CAUc -5'
28769 3' -60.5 NC_006146.1 + 117586 0.69 0.545096
Target:  5'- gGCCUcCUCgGgCUCGGacuCCGGCCAGggagAGg -3'
miRNA:   3'- -CGGA-GAGgCgGAGCC---GGUCGGUCa---UC- -5'
28769 3' -60.5 NC_006146.1 + 117159 0.68 0.593809
Target:  5'- cGCCcgUCUUCGCCcCGGCgCAGCCGc--- -3'
miRNA:   3'- -CGG--AGAGGCGGaGCCG-GUCGGUcauc -5'
28769 3' -60.5 NC_006146.1 + 115985 0.66 0.730825
Target:  5'- gGCCUa-CUGCCggucccugaaGGCCGGCCAGa-- -3'
miRNA:   3'- -CGGAgaGGCGGag--------CCGGUCGGUCauc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.