Results 1 - 20 of 81 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28769 | 3' | -60.5 | NC_006146.1 | + | 157161 | 0.67 | 0.653039 |
Target: 5'- cGgCUCUCCcgggcuGCCggggucccucCGGCCGGCCuGGUGGa -3' miRNA: 3'- -CgGAGAGG------CGGa---------GCCGGUCGG-UCAUC- -5' |
|||||||
28769 | 3' | -60.5 | NC_006146.1 | + | 80271 | 0.67 | 0.692307 |
Target: 5'- cGCCUCccaaaccacccUCCcuuuuuaccacuGCCUCGGCCA-CCAG-AGg -3' miRNA: 3'- -CGGAG-----------AGG------------CGGAGCCGGUcGGUCaUC- -5' |
|||||||
28769 | 3' | -60.5 | NC_006146.1 | + | 20407 | 0.67 | 0.692307 |
Target: 5'- uGCC-CUCCGCCUCcgacagggacGGCUA-CCAGgGGg -3' miRNA: 3'- -CGGaGAGGCGGAG----------CCGGUcGGUCaUC- -5' |
|||||||
28769 | 3' | -60.5 | NC_006146.1 | + | 61718 | 0.67 | 0.692307 |
Target: 5'- aGCC-CUCUGUCUgGGCCucagacuaagGGCCGGg-- -3' miRNA: 3'- -CGGaGAGGCGGAgCCGG----------UCGGUCauc -5' |
|||||||
28769 | 3' | -60.5 | NC_006146.1 | + | 106635 | 0.67 | 0.672735 |
Target: 5'- uGCCgCagCGCCUgcugCGGCCGGCUGGUcAGg -3' miRNA: 3'- -CGGaGagGCGGA----GCCGGUCGGUCA-UC- -5' |
|||||||
28769 | 3' | -60.5 | NC_006146.1 | + | 3341 | 0.67 | 0.661913 |
Target: 5'- gGCCUCUCCgcggGCCUCcacacguGGCCucccaggagaggGGCCGGg-- -3' miRNA: 3'- -CGGAGAGG----CGGAG-------CCGG------------UCGGUCauc -5' |
|||||||
28769 | 3' | -60.5 | NC_006146.1 | + | 2409 | 0.67 | 0.661913 |
Target: 5'- gGCCUCUCCgcggGCCUCcacacguGGCCucccaggagaggGGCCGGg-- -3' miRNA: 3'- -CGGAGAGG----CGGAG-------CCGG------------UCGGUCauc -5' |
|||||||
28769 | 3' | -60.5 | NC_006146.1 | + | 1477 | 0.67 | 0.661913 |
Target: 5'- gGCCUCUCCgcggGCCUCcacacguGGCCucccaggagaggGGCCGGg-- -3' miRNA: 3'- -CGGAGAGG----CGGAG-------CCGG------------UCGGUCauc -5' |
|||||||
28769 | 3' | -60.5 | NC_006146.1 | + | 546 | 0.67 | 0.661913 |
Target: 5'- gGCCUCUCCgcggGCCUCcacacguGGCCucccaggagaggGGCCGGg-- -3' miRNA: 3'- -CGGAGAGG----CGGAG-------CCGG------------UCGGUCauc -5' |
|||||||
28769 | 3' | -60.5 | NC_006146.1 | + | 62836 | 0.67 | 0.692307 |
Target: 5'- cCCUggCCGCCgUGGCCAGgCCGG-AGg -3' miRNA: 3'- cGGAgaGGCGGaGCCGGUC-GGUCaUC- -5' |
|||||||
28769 | 3' | -60.5 | NC_006146.1 | + | 107857 | 0.67 | 0.692307 |
Target: 5'- uGCgUCUCCGCuCUaGGCCAGUgGuGUAa -3' miRNA: 3'- -CGgAGAGGCG-GAgCCGGUCGgU-CAUc -5' |
|||||||
28769 | 3' | -60.5 | NC_006146.1 | + | 110467 | 0.67 | 0.702027 |
Target: 5'- aGCUUCUCgGCCaUGGCCAGgaaGGUGa -3' miRNA: 3'- -CGGAGAGgCGGaGCCGGUCgg-UCAUc -5' |
|||||||
28769 | 3' | -60.5 | NC_006146.1 | + | 115985 | 0.66 | 0.730825 |
Target: 5'- gGCCUa-CUGCCggucccugaaGGCCGGCCAGa-- -3' miRNA: 3'- -CGGAgaGGCGGag--------CCGGUCGGUCauc -5' |
|||||||
28769 | 3' | -60.5 | NC_006146.1 | + | 115137 | 0.66 | 0.730825 |
Target: 5'- nGCCUCgCUGCCccUGGCCcgccGCCGGgcGg -3' miRNA: 3'- -CGGAGaGGCGGa-GCCGGu---CGGUCauC- -5' |
|||||||
28769 | 3' | -60.5 | NC_006146.1 | + | 42788 | 0.66 | 0.730825 |
Target: 5'- cGCgUggCCGCCUCGGCCAGgUuGgcGg -3' miRNA: 3'- -CGgAgaGGCGGAGCCGGUCgGuCauC- -5' |
|||||||
28769 | 3' | -60.5 | NC_006146.1 | + | 13991 | 0.66 | 0.730825 |
Target: 5'- cGCCaC-CCagGCCUCGGCCGgGCUGGUGc -3' miRNA: 3'- -CGGaGaGG--CGGAGCCGGU-CGGUCAUc -5' |
|||||||
28769 | 3' | -60.5 | NC_006146.1 | + | 100736 | 0.66 | 0.721294 |
Target: 5'- gGCCUCgCCggccaccagcGCCcCGGCCaggAGCCAGgcGa -3' miRNA: 3'- -CGGAGaGG----------CGGaGCCGG---UCGGUCauC- -5' |
|||||||
28769 | 3' | -60.5 | NC_006146.1 | + | 23452 | 0.66 | 0.721294 |
Target: 5'- uGCCcgUCUCgGCCUacgaGGCCcuGGCC-GUGGc -3' miRNA: 3'- -CGG--AGAGgCGGAg---CCGG--UCGGuCAUC- -5' |
|||||||
28769 | 3' | -60.5 | NC_006146.1 | + | 51777 | 0.67 | 0.702027 |
Target: 5'- gGCCUCUCUGCCcagagcCGaGuCCAGCCAc--- -3' miRNA: 3'- -CGGAGAGGCGGa-----GC-C-GGUCGGUcauc -5' |
|||||||
28769 | 3' | -60.5 | NC_006146.1 | + | 124180 | 0.67 | 0.702027 |
Target: 5'- gGCCUCcgcCCGCCUCGGagccgccgCGGCCGa--- -3' miRNA: 3'- -CGGAGa--GGCGGAGCCg-------GUCGGUcauc -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home