Results 1 - 20 of 47 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28770 | 3' | -55.5 | NC_006146.1 | + | 129000 | 1.12 | 0.002049 |
Target: 5'- gGGGGGUCGCAGCUACUGCGCUGAAACa -3' miRNA: 3'- -CCCCCAGCGUCGAUGACGCGACUUUG- -5' |
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28770 | 3' | -55.5 | NC_006146.1 | + | 127502 | 0.77 | 0.392916 |
Target: 5'- cGGGGGUCGCAGCcg--GgGCaGAGGCa -3' miRNA: 3'- -CCCCCAGCGUCGaugaCgCGaCUUUG- -5' |
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28770 | 3' | -55.5 | NC_006146.1 | + | 115664 | 0.76 | 0.445673 |
Target: 5'- cGGGGGUCauGguGgaGCUGUaGCUGAGACc -3' miRNA: 3'- -CCCCCAG--CguCgaUGACG-CGACUUUG- -5' |
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28770 | 3' | -55.5 | NC_006146.1 | + | 77942 | 0.74 | 0.521685 |
Target: 5'- cGGGGGUCGCuGUUugguCUGgGCcGGAGCc -3' miRNA: 3'- -CCCCCAGCGuCGAu---GACgCGaCUUUG- -5' |
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28770 | 3' | -55.5 | NC_006146.1 | + | 115511 | 0.73 | 0.591997 |
Target: 5'- uGGGGUCccggaGCAGCgugccAUUGCGCUGAGc- -3' miRNA: 3'- cCCCCAG-----CGUCGa----UGACGCGACUUug -5' |
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28770 | 3' | -55.5 | NC_006146.1 | + | 61398 | 0.73 | 0.571663 |
Target: 5'- uGGGGGUUGUcccaGGCUgGCUGCGgUGGccAACg -3' miRNA: 3'- -CCCCCAGCG----UCGA-UGACGCgACU--UUG- -5' |
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28770 | 3' | -55.5 | NC_006146.1 | + | 114220 | 0.72 | 0.663701 |
Target: 5'- aGGGGGUaGCAGCccgGCgauccgGCGUUGcAGACg -3' miRNA: 3'- -CCCCCAgCGUCGa--UGa-----CGCGAC-UUUG- -5' |
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28770 | 3' | -55.5 | NC_006146.1 | + | 94999 | 0.71 | 0.704288 |
Target: 5'- uGGGGG--GCAGCUGaggagGUGCUGGAAUu -3' miRNA: 3'- -CCCCCagCGUCGAUga---CGCGACUUUG- -5' |
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28770 | 3' | -55.5 | NC_006146.1 | + | 33281 | 0.71 | 0.702277 |
Target: 5'- gGGGGGUgGCccGGCUgggcaccGCUGCGCcgccgcucgguccUGggGCu -3' miRNA: 3'- -CCCCCAgCG--UCGA-------UGACGCG-------------ACuuUG- -5' |
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28770 | 3' | -55.5 | NC_006146.1 | + | 154680 | 0.7 | 0.772599 |
Target: 5'- cGGGGGgCGCuGCUGCUGgGUggucuGCg -3' miRNA: 3'- -CCCCCaGCGuCGAUGACgCGacuu-UG- -5' |
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28770 | 3' | -55.5 | NC_006146.1 | + | 56854 | 0.7 | 0.772599 |
Target: 5'- cGGGGG-CgGCAGCU-UUG-GCUGggGCu -3' miRNA: 3'- -CCCCCaG-CGUCGAuGACgCGACuuUG- -5' |
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28770 | 3' | -55.5 | NC_006146.1 | + | 77888 | 0.7 | 0.772599 |
Target: 5'- aGGGGUCggaGCAcGCUGCUuaacagGCGCaGggGCg -3' miRNA: 3'- cCCCCAG---CGU-CGAUGA------CGCGaCuuUG- -5' |
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28770 | 3' | -55.5 | NC_006146.1 | + | 161748 | 0.69 | 0.794759 |
Target: 5'- cGGGGGUgGCGGCUgagguccgagggggcGcCUGgGCgGggGCc -3' miRNA: 3'- -CCCCCAgCGUCGA---------------U-GACgCGaCuuUG- -5' |
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28770 | 3' | -55.5 | NC_006146.1 | + | 34019 | 0.69 | 0.817803 |
Target: 5'- gGGGGGUCGgGGCagGCggGCGUggucccGggGCc -3' miRNA: 3'- -CCCCCAGCgUCGa-UGa-CGCGa-----CuuUG- -5' |
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28770 | 3' | -55.5 | NC_006146.1 | + | 66718 | 0.69 | 0.809068 |
Target: 5'- uGGGGG-CGCAGaCggccCUGCGaCUGGAucuGCa -3' miRNA: 3'- -CCCCCaGCGUC-Gau--GACGC-GACUU---UG- -5' |
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28770 | 3' | -55.5 | NC_006146.1 | + | 60278 | 0.69 | 0.807301 |
Target: 5'- cGGGGagcgggaguuugCGgAGCUGCUGaGCUGGGACc -3' miRNA: 3'- cCCCCa-----------GCgUCGAUGACgCGACUUUG- -5' |
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28770 | 3' | -55.5 | NC_006146.1 | + | 60714 | 0.69 | 0.800171 |
Target: 5'- uGGGGcCGCAuCUccaACcgGCGCUGAGGCc -3' miRNA: 3'- cCCCCaGCGUcGA---UGa-CGCGACUUUG- -5' |
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28770 | 3' | -55.5 | NC_006146.1 | + | 76925 | 0.68 | 0.858783 |
Target: 5'- cGGGGcUGCAGCcgggugaACUGCcGCUGGAGg -3' miRNA: 3'- cCCCCaGCGUCGa------UGACG-CGACUUUg -5' |
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28770 | 3' | -55.5 | NC_006146.1 | + | 122163 | 0.68 | 0.850972 |
Target: 5'- -cGGG-CGCaaggagaaggAGCUGCUGCGCgagcggGAGGCc -3' miRNA: 3'- ccCCCaGCG----------UCGAUGACGCGa-----CUUUG- -5' |
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28770 | 3' | -55.5 | NC_006146.1 | + | 88241 | 0.68 | 0.842961 |
Target: 5'- cGGGGGUCGguGgUAC-GgGCUGu--- -3' miRNA: 3'- -CCCCCAGCguCgAUGaCgCGACuuug -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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