Results 1 - 20 of 47 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28770 | 3' | -55.5 | NC_006146.1 | + | 92084 | 0.66 | 0.930073 |
Target: 5'- uGGGGGgcggCcCGGCcugggGCUGCuGCUGggGg -3' miRNA: 3'- -CCCCCa---GcGUCGa----UGACG-CGACuuUg -5' |
|||||||
28770 | 3' | -55.5 | NC_006146.1 | + | 60278 | 0.69 | 0.807301 |
Target: 5'- cGGGGagcgggaguuugCGgAGCUGCUGaGCUGGGACc -3' miRNA: 3'- cCCCCa-----------GCgUCGAUGACgCGACUUUG- -5' |
|||||||
28770 | 3' | -55.5 | NC_006146.1 | + | 66718 | 0.69 | 0.809068 |
Target: 5'- uGGGGG-CGCAGaCggccCUGCGaCUGGAucuGCa -3' miRNA: 3'- -CCCCCaGCGUC-Gau--GACGC-GACUU---UG- -5' |
|||||||
28770 | 3' | -55.5 | NC_006146.1 | + | 88241 | 0.68 | 0.842961 |
Target: 5'- cGGGGGUCGguGgUAC-GgGCUGu--- -3' miRNA: 3'- -CCCCCAGCguCgAUGaCgCGACuuug -5' |
|||||||
28770 | 3' | -55.5 | NC_006146.1 | + | 123001 | 0.68 | 0.842961 |
Target: 5'- cGGGGGacuucuucUCGgAGCUGCUGaccgagGCcGAGGCg -3' miRNA: 3'- -CCCCC--------AGCgUCGAUGACg-----CGaCUUUG- -5' |
|||||||
28770 | 3' | -55.5 | NC_006146.1 | + | 83778 | 0.68 | 0.850972 |
Target: 5'- uGGGaGGUCGCAGUcgACcccgaugGUGUUGAGAa -3' miRNA: 3'- -CCC-CCAGCGUCGa-UGa------CGCGACUUUg -5' |
|||||||
28770 | 3' | -55.5 | NC_006146.1 | + | 122163 | 0.68 | 0.850972 |
Target: 5'- -cGGG-CGCaaggagaaggAGCUGCUGCGCgagcggGAGGCc -3' miRNA: 3'- ccCCCaGCG----------UCGAUGACGCGa-----CUUUG- -5' |
|||||||
28770 | 3' | -55.5 | NC_006146.1 | + | 76925 | 0.68 | 0.858783 |
Target: 5'- cGGGGcUGCAGCcgggugaACUGCcGCUGGAGg -3' miRNA: 3'- cCCCCaGCGUCGa------UGACG-CGACUUUg -5' |
|||||||
28770 | 3' | -55.5 | NC_006146.1 | + | 141305 | 0.67 | 0.873783 |
Target: 5'- uGGGGGUCG-GGCUGgcCUGCcagGggGCa -3' miRNA: 3'- -CCCCCAGCgUCGAU--GACGcgaCuuUG- -5' |
|||||||
28770 | 3' | -55.5 | NC_006146.1 | + | 144383 | 0.67 | 0.873783 |
Target: 5'- uGGGGGUCG-GGCUGgcCUGCcagGggGCa -3' miRNA: 3'- -CCCCCAGCgUCGAU--GACGcgaCuuUG- -5' |
|||||||
28770 | 3' | -55.5 | NC_006146.1 | + | 147461 | 0.67 | 0.873783 |
Target: 5'- uGGGGGUCG-GGCUGgcCUGCcagGggGCa -3' miRNA: 3'- -CCCCCAGCgUCGAU--GACGcgaCuuUG- -5' |
|||||||
28770 | 3' | -55.5 | NC_006146.1 | + | 150539 | 0.67 | 0.873783 |
Target: 5'- uGGGGGUCG-GGCUGgcCUGCcagGggGCa -3' miRNA: 3'- -CCCCCAGCgUCGAU--GACGcgaCuuUG- -5' |
|||||||
28770 | 3' | -55.5 | NC_006146.1 | + | 153617 | 0.67 | 0.873783 |
Target: 5'- uGGGGGUCG-GGCUGgcCUGCcagGggGCa -3' miRNA: 3'- -CCCCCAGCgUCGAU--GACGcgaCuuUG- -5' |
|||||||
28770 | 3' | -55.5 | NC_006146.1 | + | 156694 | 0.67 | 0.873783 |
Target: 5'- uGGGGGUCG-GGCUGgcCUGCcagGggGCa -3' miRNA: 3'- -CCCCCAGCgUCGAU--GACGcgaCuuUG- -5' |
|||||||
28770 | 3' | -55.5 | NC_006146.1 | + | 117998 | 0.67 | 0.887913 |
Target: 5'- cGGGGGgccaCGCAGaccaUGCgGgGCUcGggGCg -3' miRNA: 3'- -CCCCCa---GCGUCg---AUGaCgCGA-CuuUG- -5' |
|||||||
28770 | 3' | -55.5 | NC_006146.1 | + | 18881 | 0.67 | 0.901137 |
Target: 5'- cGGGGGcCuCAGCccccACUGUGCUucuaccGAGACa -3' miRNA: 3'- -CCCCCaGcGUCGa---UGACGCGA------CUUUG- -5' |
|||||||
28770 | 3' | -55.5 | NC_006146.1 | + | 24844 | 0.67 | 0.901137 |
Target: 5'- -cGGGUCaccaacaaGCAGgUGCUGCaGCUGGAcGCg -3' miRNA: 3'- ccCCCAG--------CGUCgAUGACG-CGACUU-UG- -5' |
|||||||
28770 | 3' | -55.5 | NC_006146.1 | + | 137909 | 0.67 | 0.901137 |
Target: 5'- cGGGGGUaGCGGCg---GCaCUGAAAUu -3' miRNA: 3'- -CCCCCAgCGUCGaugaCGcGACUUUG- -5' |
|||||||
28770 | 3' | -55.5 | NC_006146.1 | + | 39536 | 0.66 | 0.924764 |
Target: 5'- uGGGGGagGCGGCgcaaGgGCUGGAu- -3' miRNA: 3'- -CCCCCagCGUCGaugaCgCGACUUug -5' |
|||||||
28770 | 3' | -55.5 | NC_006146.1 | + | 39747 | 0.66 | 0.930073 |
Target: 5'- uGGuGGGUUuCGGCUGgaG-GCUGggGCu -3' miRNA: 3'- -CC-CCCAGcGUCGAUgaCgCGACuuUG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home