miRNA display CGI


Results 1 - 20 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28770 3' -55.5 NC_006146.1 + 60714 0.69 0.800171
Target:  5'- uGGGGcCGCAuCUccaACcgGCGCUGAGGCc -3'
miRNA:   3'- cCCCCaGCGUcGA---UGa-CGCGACUUUG- -5'
28770 3' -55.5 NC_006146.1 + 141305 0.67 0.873783
Target:  5'- uGGGGGUCG-GGCUGgcCUGCcagGggGCa -3'
miRNA:   3'- -CCCCCAGCgUCGAU--GACGcgaCuuUG- -5'
28770 3' -55.5 NC_006146.1 + 76925 0.68 0.858783
Target:  5'- cGGGGcUGCAGCcgggugaACUGCcGCUGGAGg -3'
miRNA:   3'- cCCCCaGCGUCGa------UGACG-CGACUUUg -5'
28770 3' -55.5 NC_006146.1 + 122163 0.68 0.850972
Target:  5'- -cGGG-CGCaaggagaaggAGCUGCUGCGCgagcggGAGGCc -3'
miRNA:   3'- ccCCCaGCG----------UCGAUGACGCGa-----CUUUG- -5'
28770 3' -55.5 NC_006146.1 + 83778 0.68 0.850972
Target:  5'- uGGGaGGUCGCAGUcgACcccgaugGUGUUGAGAa -3'
miRNA:   3'- -CCC-CCAGCGUCGa-UGa------CGCGACUUUg -5'
28770 3' -55.5 NC_006146.1 + 123001 0.68 0.842961
Target:  5'- cGGGGGacuucuucUCGgAGCUGCUGaccgagGCcGAGGCg -3'
miRNA:   3'- -CCCCC--------AGCgUCGAUGACg-----CGaCUUUG- -5'
28770 3' -55.5 NC_006146.1 + 88241 0.68 0.842961
Target:  5'- cGGGGGUCGguGgUAC-GgGCUGu--- -3'
miRNA:   3'- -CCCCCAGCguCgAUGaCgCGACuuug -5'
28770 3' -55.5 NC_006146.1 + 66718 0.69 0.809068
Target:  5'- uGGGGG-CGCAGaCggccCUGCGaCUGGAucuGCa -3'
miRNA:   3'- -CCCCCaGCGUC-Gau--GACGC-GACUU---UG- -5'
28770 3' -55.5 NC_006146.1 + 60278 0.69 0.807301
Target:  5'- cGGGGagcgggaguuugCGgAGCUGCUGaGCUGGGACc -3'
miRNA:   3'- cCCCCa-----------GCgUCGAUGACgCGACUUUG- -5'
28770 3' -55.5 NC_006146.1 + 144383 0.67 0.873783
Target:  5'- uGGGGGUCG-GGCUGgcCUGCcagGggGCa -3'
miRNA:   3'- -CCCCCAGCgUCGAU--GACGcgaCuuUG- -5'
28770 3' -55.5 NC_006146.1 + 147461 0.67 0.873783
Target:  5'- uGGGGGUCG-GGCUGgcCUGCcagGggGCa -3'
miRNA:   3'- -CCCCCAGCgUCGAU--GACGcgaCuuUG- -5'
28770 3' -55.5 NC_006146.1 + 150539 0.67 0.873783
Target:  5'- uGGGGGUCG-GGCUGgcCUGCcagGggGCa -3'
miRNA:   3'- -CCCCCAGCgUCGAU--GACGcgaCuuUG- -5'
28770 3' -55.5 NC_006146.1 + 92084 0.66 0.930073
Target:  5'- uGGGGGgcggCcCGGCcugggGCUGCuGCUGggGg -3'
miRNA:   3'- -CCCCCa---GcGUCGa----UGACG-CGACuuUg -5'
28770 3' -55.5 NC_006146.1 + 39536 0.66 0.924764
Target:  5'- uGGGGGagGCGGCgcaaGgGCUGGAu- -3'
miRNA:   3'- -CCCCCagCGUCGaugaCgCGACUUug -5'
28770 3' -55.5 NC_006146.1 + 137909 0.67 0.901137
Target:  5'- cGGGGGUaGCGGCg---GCaCUGAAAUu -3'
miRNA:   3'- -CCCCCAgCGUCGaugaCGcGACUUUG- -5'
28770 3' -55.5 NC_006146.1 + 24844 0.67 0.901137
Target:  5'- -cGGGUCaccaacaaGCAGgUGCUGCaGCUGGAcGCg -3'
miRNA:   3'- ccCCCAG--------CGUCgAUGACG-CGACUU-UG- -5'
28770 3' -55.5 NC_006146.1 + 18881 0.67 0.901137
Target:  5'- cGGGGGcCuCAGCccccACUGUGCUucuaccGAGACa -3'
miRNA:   3'- -CCCCCaGcGUCGa---UGACGCGA------CUUUG- -5'
28770 3' -55.5 NC_006146.1 + 117998 0.67 0.887913
Target:  5'- cGGGGGgccaCGCAGaccaUGCgGgGCUcGggGCg -3'
miRNA:   3'- -CCCCCa---GCGUCg---AUGaCgCGA-CuuUG- -5'
28770 3' -55.5 NC_006146.1 + 156694 0.67 0.873783
Target:  5'- uGGGGGUCG-GGCUGgcCUGCcagGggGCa -3'
miRNA:   3'- -CCCCCAGCgUCGAU--GACGcgaCuuUG- -5'
28770 3' -55.5 NC_006146.1 + 153617 0.67 0.873783
Target:  5'- uGGGGGUCG-GGCUGgcCUGCcagGggGCa -3'
miRNA:   3'- -CCCCCAGCgUCGAU--GACGcgaCuuUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.