Results 1 - 20 of 111 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28770 | 5' | -55.9 | NC_006146.1 | + | 2408 | 0.67 | 0.864026 |
Target: 5'- cGGCCUCUcCGCG-GGCCUCcacacGUGGCc -3' miRNA: 3'- uUUGGAGAaGUGCuCCGGGGc----CAUCG- -5' |
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28770 | 5' | -55.9 | NC_006146.1 | + | 125301 | 0.66 | 0.917295 |
Target: 5'- uGAGCCcgagauguccgUCUUCGCGAGGCaggCCGccUGGCu -3' miRNA: 3'- -UUUGG-----------AGAAGUGCUCCGg--GGCc-AUCG- -5' |
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28770 | 5' | -55.9 | NC_006146.1 | + | 71534 | 0.66 | 0.917295 |
Target: 5'- uGGGCCUCaaCGCGcGG-CCCGGgcGCc -3' miRNA: 3'- -UUUGGAGaaGUGCuCCgGGGCCauCG- -5' |
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28770 | 5' | -55.9 | NC_006146.1 | + | 27319 | 0.66 | 0.899033 |
Target: 5'- -uGCCUgCUUCAacuGGCCCUccaaaaacagcgGGUGGCg -3' miRNA: 3'- uuUGGA-GAAGUgcuCCGGGG------------CCAUCG- -5' |
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28770 | 5' | -55.9 | NC_006146.1 | + | 122321 | 0.67 | 0.884314 |
Target: 5'- uGGCCUCccugaccccCGAGGCCCCGGa--- -3' miRNA: 3'- uUUGGAGaagu-----GCUCCGGGGCCaucg -5' |
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28770 | 5' | -55.9 | NC_006146.1 | + | 30486 | 0.67 | 0.878692 |
Target: 5'- gGAACCUCUUCcugccaACG-GGCCCCaacacagAGCu -3' miRNA: 3'- -UUUGGAGAAG------UGCuCCGGGGcca----UCG- -5' |
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28770 | 5' | -55.9 | NC_006146.1 | + | 71063 | 0.67 | 0.878692 |
Target: 5'- gGGACgUCUUCAccuauuccacCGAGGCCCCGa---- -3' miRNA: 3'- -UUUGgAGAAGU----------GCUCCGGGGCcaucg -5' |
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28770 | 5' | -55.9 | NC_006146.1 | + | 130579 | 0.67 | 0.871466 |
Target: 5'- aAGACCUC-UCGuugaaccccacCGAGGCCCCGaccGCu -3' miRNA: 3'- -UUUGGAGaAGU-----------GCUCCGGGGCcauCG- -5' |
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28770 | 5' | -55.9 | NC_006146.1 | + | 3340 | 0.67 | 0.864026 |
Target: 5'- cGGCCUCUcCGCG-GGCCUCcacacGUGGCc -3' miRNA: 3'- uUUGGAGAaGUGCuCCGGGGc----CAUCG- -5' |
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28770 | 5' | -55.9 | NC_006146.1 | + | 142131 | 0.66 | 0.922909 |
Target: 5'- --uCCUCUggACuaGGGGCCCUGGgccccgagGGCg -3' miRNA: 3'- uuuGGAGAagUG--CUCCGGGGCCa-------UCG- -5' |
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28770 | 5' | -55.9 | NC_006146.1 | + | 145209 | 0.66 | 0.922909 |
Target: 5'- --uCCUCUggACuaGGGGCCCUGGgccccgagGGCg -3' miRNA: 3'- uuuGGAGAagUG--CUCCGGGGCCa-------UCG- -5' |
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28770 | 5' | -55.9 | NC_006146.1 | + | 148287 | 0.66 | 0.922909 |
Target: 5'- --uCCUCUggACuaGGGGCCCUGGgccccgagGGCg -3' miRNA: 3'- uuuGGAGAagUG--CUCCGGGGCCa-------UCG- -5' |
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28770 | 5' | -55.9 | NC_006146.1 | + | 3192 | 0.66 | 0.928284 |
Target: 5'- -cACC-CgacgCGCGcucGGGCCCCGGggaAGCc -3' miRNA: 3'- uuUGGaGaa--GUGC---UCCGGGGCCa--UCG- -5' |
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28770 | 5' | -55.9 | NC_006146.1 | + | 2260 | 0.66 | 0.928284 |
Target: 5'- -cACC-CgacgCGCGcucGGGCCCCGGggaAGCc -3' miRNA: 3'- uuUGGaGaa--GUGC---UCCGGGGCCa--UCG- -5' |
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28770 | 5' | -55.9 | NC_006146.1 | + | 1328 | 0.66 | 0.928284 |
Target: 5'- -cACC-CgacgCGCGcucGGGCCCCGGggaAGCc -3' miRNA: 3'- uuUGGaGaa--GUGC---UCCGGGGCCa--UCG- -5' |
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28770 | 5' | -55.9 | NC_006146.1 | + | 10500 | 0.66 | 0.922909 |
Target: 5'- --cCCUCUaUCGC-AGGCUCUGGUuuGCg -3' miRNA: 3'- uuuGGAGA-AGUGcUCCGGGGCCAu-CG- -5' |
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28770 | 5' | -55.9 | NC_006146.1 | + | 168152 | 0.66 | 0.922909 |
Target: 5'- uGGGCCU----GCGAGGgCCgGGUAGUa -3' miRNA: 3'- -UUUGGAgaagUGCUCCgGGgCCAUCG- -5' |
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28770 | 5' | -55.9 | NC_006146.1 | + | 157521 | 0.66 | 0.922909 |
Target: 5'- --uCCUCUggACuaGGGGCCCUGGgccccgagGGCg -3' miRNA: 3'- uuuGGAGAagUG--CUCCGGGGCCa-------UCG- -5' |
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28770 | 5' | -55.9 | NC_006146.1 | + | 154443 | 0.66 | 0.922909 |
Target: 5'- --uCCUCUggACuaGGGGCCCUGGgccccgagGGCg -3' miRNA: 3'- uuuGGAGAagUG--CUCCGGGGCCa-------UCG- -5' |
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28770 | 5' | -55.9 | NC_006146.1 | + | 151365 | 0.66 | 0.922909 |
Target: 5'- --uCCUCUggACuaGGGGCCCUGGgccccgagGGCg -3' miRNA: 3'- uuuGGAGAagUG--CUCCGGGGCCa-------UCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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