miRNA display CGI


Results 21 - 40 of 312 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28771 3' -59 NC_006146.1 + 89129 0.75 0.347525
Target:  5'- aCCCCCG-GAGACCgGgCGGCCaugcucUCAUGCa -3'
miRNA:   3'- -GGGGGCgUUCUGG-UgGCCGG------AGUACG- -5'
28771 3' -59 NC_006146.1 + 165921 0.75 0.354304
Target:  5'- aCCCCGCGuuagugaAGGCCGCCaggaGGCuCUCGUGg -3'
miRNA:   3'- gGGGGCGU-------UCUGGUGG----CCG-GAGUACg -5'
28771 3' -59 NC_006146.1 + 92939 0.74 0.378361
Target:  5'- aCCUC-CAAGGCCACCGG-CUCcgGCc -3'
miRNA:   3'- gGGGGcGUUCUGGUGGCCgGAGuaCG- -5'
28771 3' -59 NC_006146.1 + 156557 0.74 0.394454
Target:  5'- aCCCCaccaGCAGGGCCGCaaCGGCCcugCGUGa -3'
miRNA:   3'- -GGGGg---CGUUCUGGUG--GCCGGa--GUACg -5'
28771 3' -59 NC_006146.1 + 119871 0.74 0.410983
Target:  5'- gCCUCCGUggGAU--CCGGCCUCGUacGCu -3'
miRNA:   3'- -GGGGGCGuuCUGguGGCCGGAGUA--CG- -5'
28771 3' -59 NC_006146.1 + 92978 0.73 0.41856
Target:  5'- aCCCCCggcaccuGCGAGGCCGCCcGCC-CcUGCg -3'
miRNA:   3'- -GGGGG-------CGUUCUGGUGGcCGGaGuACG- -5'
28771 3' -59 NC_006146.1 + 158121 0.73 0.433965
Target:  5'- gCCCCUGCAGGGCCGcguccagguCCGGCaggucacaggugggCUCAgcgUGCa -3'
miRNA:   3'- -GGGGGCGUUCUGGU---------GGCCG--------------GAGU---ACG- -5'
28771 3' -59 NC_006146.1 + 10997 0.73 0.435697
Target:  5'- gCCCCC-CAucuucgaGGGCC-CCGGCCUCGaggcccucUGCg -3'
miRNA:   3'- -GGGGGcGU-------UCUGGuGGCCGGAGU--------ACG- -5'
28771 3' -59 NC_006146.1 + 99413 0.73 0.436564
Target:  5'- cUCCCC-CAGGcACCACCGGCCaaacgGCa -3'
miRNA:   3'- -GGGGGcGUUC-UGGUGGCCGGagua-CG- -5'
28771 3' -59 NC_006146.1 + 91204 0.73 0.445293
Target:  5'- cCCCCCGCcu-GCCuguugGCCGGUCUC-UGCu -3'
miRNA:   3'- -GGGGGCGuucUGG-----UGGCCGGAGuACG- -5'
28771 3' -59 NC_006146.1 + 99110 0.73 0.454118
Target:  5'- gUCCCGCGccuGcCCuCCGGCCUCAgGCg -3'
miRNA:   3'- gGGGGCGUu--CuGGuGGCCGGAGUaCG- -5'
28771 3' -59 NC_006146.1 + 68981 0.73 0.454118
Target:  5'- gCCCCCGC--GGCCACCGGCg-CAUu- -3'
miRNA:   3'- -GGGGGCGuuCUGGUGGCCGgaGUAcg -5'
28771 3' -59 NC_006146.1 + 119687 0.72 0.49033
Target:  5'- -aCCCGCc--ACC-CCGGCCUCGUGg -3'
miRNA:   3'- ggGGGCGuucUGGuGGCCGGAGUACg -5'
28771 3' -59 NC_006146.1 + 128101 0.72 0.499594
Target:  5'- gCUCUGCGAGACCGCCaaccuGGCCgag-GCg -3'
miRNA:   3'- gGGGGCGUUCUGGUGG-----CCGGaguaCG- -5'
28771 3' -59 NC_006146.1 + 97402 0.72 0.508934
Target:  5'- gCCUgCGCGuGACC-CCGcGCCUgGUGCu -3'
miRNA:   3'- -GGGgGCGUuCUGGuGGC-CGGAgUACG- -5'
28771 3' -59 NC_006146.1 + 39060 0.72 0.508934
Target:  5'- gCCCUGUGAauGGUCGCCGGCCUCcgGUc -3'
miRNA:   3'- gGGGGCGUU--CUGGUGGCCGGAGuaCG- -5'
28771 3' -59 NC_006146.1 + 15113 0.72 0.518347
Target:  5'- gCCCC-CAGGGCCACCGaGCggCUCuucUGCg -3'
miRNA:   3'- gGGGGcGUUCUGGUGGC-CG--GAGu--ACG- -5'
28771 3' -59 NC_006146.1 + 1739 0.72 0.518347
Target:  5'- cCCCCUGCAGG--CGCCGGCCccUCccGCc -3'
miRNA:   3'- -GGGGGCGUUCugGUGGCCGG--AGuaCG- -5'
28771 3' -59 NC_006146.1 + 3603 0.72 0.518347
Target:  5'- cCCCCUGCAGG--CGCCGGCCccUCccGCc -3'
miRNA:   3'- -GGGGGCGUUCugGUGGCCGG--AGuaCG- -5'
28771 3' -59 NC_006146.1 + 2671 0.72 0.518347
Target:  5'- cCCCCUGCAGG--CGCCGGCCccUCccGCc -3'
miRNA:   3'- -GGGGGCGUUCugGUGGCCGG--AGuaCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.