miRNA display CGI


Results 1 - 20 of 312 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28771 3' -59 NC_006146.1 + 128063 1.13 0.000962
Target:  5'- cCCCCCGCAAGACCACCGGCCUCAUGCa -3'
miRNA:   3'- -GGGGGCGUUCUGGUGGCCGGAGUACG- -5'
28771 3' -59 NC_006146.1 + 136825 0.82 0.125914
Target:  5'- gCCCCC-CGGGACCcCCGGCCcCGUGCc -3'
miRNA:   3'- -GGGGGcGUUCUGGuGGCCGGaGUACG- -5'
28771 3' -59 NC_006146.1 + 118083 0.8 0.165414
Target:  5'- cCCUCCGCAuccuGGGCa--CGGCCUCGUGCa -3'
miRNA:   3'- -GGGGGCGU----UCUGgugGCCGGAGUACG- -5'
28771 3' -59 NC_006146.1 + 52921 0.77 0.278508
Target:  5'- gCCCCC-CGGGGgCGCUGGCCUCGUccGCc -3'
miRNA:   3'- -GGGGGcGUUCUgGUGGCCGGAGUA--CG- -5'
28771 3' -59 NC_006146.1 + 169768 0.76 0.291386
Target:  5'- aCCCUCGCGGGGgCACCGGCg-CGUGg -3'
miRNA:   3'- -GGGGGCGUUCUgGUGGCCGgaGUACg -5'
28771 3' -59 NC_006146.1 + 168836 0.76 0.291386
Target:  5'- aCCCUCGCGGGGgCACCGGCg-CGUGg -3'
miRNA:   3'- -GGGGGCGUUCUgGUGGCCGgaGUACg -5'
28771 3' -59 NC_006146.1 + 167904 0.76 0.291386
Target:  5'- aCCCUCGCGGGGgCACCGGCg-CGUGg -3'
miRNA:   3'- -GGGGGCGUUCUgGUGGCCGgaGUACg -5'
28771 3' -59 NC_006146.1 + 2780 0.76 0.297998
Target:  5'- gCCCCC-CGGGACCccgggcgcgcGCCGGCCUCccGUc -3'
miRNA:   3'- -GGGGGcGUUCUGG----------UGGCCGGAGuaCG- -5'
28771 3' -59 NC_006146.1 + 916 0.76 0.297998
Target:  5'- gCCCCC-CGGGACCccgggcgcgcGCCGGCCUCccGUc -3'
miRNA:   3'- -GGGGGcGUUCUGG----------UGGCCGGAGuaCG- -5'
28771 3' -59 NC_006146.1 + 3712 0.76 0.297998
Target:  5'- gCCCCC-CGGGACCccgggcgcgcGCCGGCCUCccGUc -3'
miRNA:   3'- -GGGGGcGUUCUGG----------UGGCCGGAGuaCG- -5'
28771 3' -59 NC_006146.1 + 1848 0.76 0.297998
Target:  5'- gCCCCC-CGGGACCccgggcgcgcGCCGGCCUCccGUc -3'
miRNA:   3'- -GGGGGcGUUCUGG----------UGGCCGGAGuaCG- -5'
28771 3' -59 NC_006146.1 + 44719 0.76 0.311568
Target:  5'- gCCCCCGC----UgGCCGGCCUgAUGCg -3'
miRNA:   3'- -GGGGGCGuucuGgUGGCCGGAgUACG- -5'
28771 3' -59 NC_006146.1 + 101060 0.75 0.325603
Target:  5'- cCUCCCG-AGGGCCACgGGC-UCAUGCu -3'
miRNA:   3'- -GGGGGCgUUCUGGUGgCCGgAGUACG- -5'
28771 3' -59 NC_006146.1 + 117571 0.75 0.340102
Target:  5'- gCCCCGC--GGCCGCCGGgCCUCcucggGCu -3'
miRNA:   3'- gGGGGCGuuCUGGUGGCC-GGAGua---CG- -5'
28771 3' -59 NC_006146.1 + 707 0.75 0.347525
Target:  5'- gCCCCCGCcAGGCC-CCGGCCcCGc-- -3'
miRNA:   3'- -GGGGGCGuUCUGGuGGCCGGaGUacg -5'
28771 3' -59 NC_006146.1 + 1638 0.75 0.347525
Target:  5'- gCCCCCGCcAGGCC-CCGGCCcCGc-- -3'
miRNA:   3'- -GGGGGCGuUCUGGuGGCCGGaGUacg -5'
28771 3' -59 NC_006146.1 + 2570 0.75 0.347525
Target:  5'- gCCCCCGCcAGGCC-CCGGCCcCGc-- -3'
miRNA:   3'- -GGGGGCGuUCUGGuGGCCGGaGUacg -5'
28771 3' -59 NC_006146.1 + 131017 0.75 0.347525
Target:  5'- gCCCCGC-AGGCCGCuCaGCCUCA-GCc -3'
miRNA:   3'- gGGGGCGuUCUGGUG-GcCGGAGUaCG- -5'
28771 3' -59 NC_006146.1 + 129078 0.75 0.347525
Target:  5'- gCCCCCGCGA---CAuCCGGCCugUCGUGCa -3'
miRNA:   3'- -GGGGGCGUUcugGU-GGCCGG--AGUACG- -5'
28771 3' -59 NC_006146.1 + 3502 0.75 0.347525
Target:  5'- gCCCCCGCcAGGCC-CCGGCCcCGc-- -3'
miRNA:   3'- -GGGGGCGuUCUGGuGGCCGGaGUacg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.