miRNA display CGI


Results 1 - 20 of 312 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28771 3' -59 NC_006146.1 + 52921 0.77 0.278508
Target:  5'- gCCCCC-CGGGGgCGCUGGCCUCGUccGCc -3'
miRNA:   3'- -GGGGGcGUUCUgGUGGCCGGAGUA--CG- -5'
28771 3' -59 NC_006146.1 + 97402 0.72 0.508934
Target:  5'- gCCUgCGCGuGACC-CCGcGCCUgGUGCu -3'
miRNA:   3'- -GGGgGCGUuCUGGuGGC-CGGAgUACG- -5'
28771 3' -59 NC_006146.1 + 73995 0.71 0.527828
Target:  5'- aCUCCUGgAAacuGACCACCacGGCCUCAcGCu -3'
miRNA:   3'- -GGGGGCgUU---CUGGUGG--CCGGAGUaCG- -5'
28771 3' -59 NC_006146.1 + 113187 0.66 0.845842
Target:  5'- aCCCCGUugauGACCA-CGGCCgggaugagaGUGUa -3'
miRNA:   3'- gGGGGCGuu--CUGGUgGCCGGag-------UACG- -5'
28771 3' -59 NC_006146.1 + 44719 0.76 0.311568
Target:  5'- gCCCCCGC----UgGCCGGCCUgAUGCg -3'
miRNA:   3'- -GGGGGCGuucuGgUGGCCGGAgUACG- -5'
28771 3' -59 NC_006146.1 + 129078 0.75 0.347525
Target:  5'- gCCCCCGCGA---CAuCCGGCCugUCGUGCa -3'
miRNA:   3'- -GGGGGCGUUcugGU-GGCCGG--AGUACG- -5'
28771 3' -59 NC_006146.1 + 89129 0.75 0.347525
Target:  5'- aCCCCCG-GAGACCgGgCGGCCaugcucUCAUGCa -3'
miRNA:   3'- -GGGGGCgUUCUGG-UgGCCGG------AGUACG- -5'
28771 3' -59 NC_006146.1 + 92939 0.74 0.378361
Target:  5'- aCCUC-CAAGGCCACCGG-CUCcgGCc -3'
miRNA:   3'- gGGGGcGUUCUGGUGGCCgGAGuaCG- -5'
28771 3' -59 NC_006146.1 + 158121 0.73 0.433965
Target:  5'- gCCCCUGCAGGGCCGcguccagguCCGGCaggucacaggugggCUCAgcgUGCa -3'
miRNA:   3'- -GGGGGCGUUCUGGU---------GGCCG--------------GAGU---ACG- -5'
28771 3' -59 NC_006146.1 + 39060 0.72 0.508934
Target:  5'- gCCCUGUGAauGGUCGCCGGCCUCcgGUc -3'
miRNA:   3'- gGGGGCGUU--CUGGUGGCCGGAGuaCG- -5'
28771 3' -59 NC_006146.1 + 99110 0.73 0.454118
Target:  5'- gUCCCGCGccuGcCCuCCGGCCUCAgGCg -3'
miRNA:   3'- gGGGGCGUu--CuGGuGGCCGGAGUaCG- -5'
28771 3' -59 NC_006146.1 + 92978 0.73 0.41856
Target:  5'- aCCCCCggcaccuGCGAGGCCGCCcGCC-CcUGCg -3'
miRNA:   3'- -GGGGG-------CGUUCUGGUGGcCGGaGuACG- -5'
28771 3' -59 NC_006146.1 + 167904 0.76 0.291386
Target:  5'- aCCCUCGCGGGGgCACCGGCg-CGUGg -3'
miRNA:   3'- -GGGGGCGUUCUgGUGGCCGgaGUACg -5'
28771 3' -59 NC_006146.1 + 119687 0.72 0.49033
Target:  5'- -aCCCGCc--ACC-CCGGCCUCGUGg -3'
miRNA:   3'- ggGGGCGuucUGGuGGCCGGAGUACg -5'
28771 3' -59 NC_006146.1 + 168836 0.76 0.291386
Target:  5'- aCCCUCGCGGGGgCACCGGCg-CGUGg -3'
miRNA:   3'- -GGGGGCGUUCUgGUGGCCGgaGUACg -5'
28771 3' -59 NC_006146.1 + 156557 0.74 0.394454
Target:  5'- aCCCCaccaGCAGGGCCGCaaCGGCCcugCGUGa -3'
miRNA:   3'- -GGGGg---CGUUCUGGUG--GCCGGa--GUACg -5'
28771 3' -59 NC_006146.1 + 128101 0.72 0.499594
Target:  5'- gCUCUGCGAGACCGCCaaccuGGCCgag-GCg -3'
miRNA:   3'- gGGGGCGUUCUGGUGG-----CCGGaguaCG- -5'
28771 3' -59 NC_006146.1 + 99207 0.72 0.518347
Target:  5'- gCCUCCaGgGAGGCCG-CGGCCUCG-GCg -3'
miRNA:   3'- -GGGGG-CgUUCUGGUgGCCGGAGUaCG- -5'
28771 3' -59 NC_006146.1 + 169768 0.76 0.291386
Target:  5'- aCCCUCGCGGGGgCACCGGCg-CGUGg -3'
miRNA:   3'- -GGGGGCGUUCUgGUGGCCGgaGUACg -5'
28771 3' -59 NC_006146.1 + 131017 0.75 0.347525
Target:  5'- gCCCCGC-AGGCCGCuCaGCCUCA-GCc -3'
miRNA:   3'- gGGGGCGuUCUGGUG-GcCGGAGUaCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.