miRNA display CGI


Results 1 - 20 of 312 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28771 3' -59 NC_006146.1 + 113187 0.66 0.845842
Target:  5'- aCCCCGUugauGACCA-CGGCCgggaugagaGUGUa -3'
miRNA:   3'- gGGGGCGuu--CUGGUgGCCGGag-------UACG- -5'
28771 3' -59 NC_006146.1 + 114705 0.66 0.821838
Target:  5'- uCgUCCGCGAGACC-CgGGCCcug-GCg -3'
miRNA:   3'- -GgGGGCGUUCUGGuGgCCGGaguaCG- -5'
28771 3' -59 NC_006146.1 + 103002 0.66 0.821838
Target:  5'- gCUCCCaCGAGGCCcaguucguGCUGGUCUCGgccGCu -3'
miRNA:   3'- -GGGGGcGUUCUGG--------UGGCCGGAGUa--CG- -5'
28771 3' -59 NC_006146.1 + 124978 0.66 0.816858
Target:  5'- aCCCCguccaccuacgGCAcGGUCACCGGCCgggcgcugagaaaucUCAUGCc -3'
miRNA:   3'- gGGGG-----------CGUuCUGGUGGCCGG---------------AGUACG- -5'
28771 3' -59 NC_006146.1 + 808 0.66 0.813507
Target:  5'- cCCCCUGCGGcgccGGCCccucccGCCGGCCaucccCAcGCg -3'
miRNA:   3'- -GGGGGCGUU----CUGG------UGGCCGGa----GUaCG- -5'
28771 3' -59 NC_006146.1 + 38141 0.66 0.813507
Target:  5'- aCCgUGCGGGACCG-CGGCaUCcgGCc -3'
miRNA:   3'- gGGgGCGUUCUGGUgGCCGgAGuaCG- -5'
28771 3' -59 NC_006146.1 + 123887 0.66 0.813507
Target:  5'- gCgCCCGCGAGuCCgACCGgGCCgc-UGCc -3'
miRNA:   3'- -GgGGGCGUUCuGG-UGGC-CGGaguACG- -5'
28771 3' -59 NC_006146.1 + 157044 0.66 0.805022
Target:  5'- aCgCUgGCAcaccGGGCCGCCGGggucCCUCcgGCc -3'
miRNA:   3'- -GgGGgCGU----UCUGGUGGCC----GGAGuaCG- -5'
28771 3' -59 NC_006146.1 + 153966 0.66 0.805022
Target:  5'- aCgCUgGCAcaccGGGCCGCCGGggucCCUCcgGCc -3'
miRNA:   3'- -GgGGgCGU----UCUGGUGGCC----GGAGuaCG- -5'
28771 3' -59 NC_006146.1 + 120180 0.66 0.828388
Target:  5'- aCCCCGaCcGGGCCcucgucuaugacCCGGCCUCuaacagggaaGUGCc -3'
miRNA:   3'- gGGGGC-GuUCUGGu-----------GGCCGGAG----------UACG- -5'
28771 3' -59 NC_006146.1 + 32935 0.66 0.830009
Target:  5'- gCCCCCGgGAGGCC--CGGCCgCGa-- -3'
miRNA:   3'- -GGGGGCgUUCUGGugGCCGGaGUacg -5'
28771 3' -59 NC_006146.1 + 66362 0.66 0.830009
Target:  5'- gCCCCUgguGCAGGGCUuucaaGGCCUCAa-- -3'
miRNA:   3'- -GGGGG---CGUUCUGGugg--CCGGAGUacg -5'
28771 3' -59 NC_006146.1 + 127578 0.66 0.845842
Target:  5'- gCCCUGggcggcCGAGGCCgcGCCGGCCggGUGa -3'
miRNA:   3'- gGGGGC------GUUCUGG--UGGCCGGagUACg -5'
28771 3' -59 NC_006146.1 + 11469 0.66 0.845842
Target:  5'- uUCCCCGCcucGACCAucagccacCCGGaCUCGgggGCc -3'
miRNA:   3'- -GGGGGCGuu-CUGGU--------GGCCgGAGUa--CG- -5'
28771 3' -59 NC_006146.1 + 95311 0.66 0.838013
Target:  5'- cCCCCCuugauCGGGACgG-CGGCCUCAUu- -3'
miRNA:   3'- -GGGGGc----GUUCUGgUgGCCGGAGUAcg -5'
28771 3' -59 NC_006146.1 + 78433 0.66 0.838013
Target:  5'- uCCCaCCGCGAGACUuuagaaACaUGGCCaUCccgGCg -3'
miRNA:   3'- -GGG-GGCGUUCUGG------UG-GCCGG-AGua-CG- -5'
28771 3' -59 NC_006146.1 + 123988 0.66 0.838013
Target:  5'- gUCCCCGUgcGACCcccucaacCCGGCCUaCGUc- -3'
miRNA:   3'- -GGGGGCGuuCUGGu-------GGCCGGA-GUAcg -5'
28771 3' -59 NC_006146.1 + 115336 0.66 0.838013
Target:  5'- aCCCCGgacucggucauCGAGGCCuucCUGGCCggCGUGg -3'
miRNA:   3'- gGGGGC-----------GUUCUGGu--GGCCGGa-GUACg -5'
28771 3' -59 NC_006146.1 + 125486 0.66 0.830009
Target:  5'- aCCCgGcCGGGGCCucgcGCUGGCCcaccgaCGUGCu -3'
miRNA:   3'- gGGGgC-GUUCUGG----UGGCCGGa-----GUACG- -5'
28771 3' -59 NC_006146.1 + 13979 0.66 0.830009
Target:  5'- -gCCCGUcAGcgccGCCACCcaGGCCUCGgccggGCu -3'
miRNA:   3'- ggGGGCGuUC----UGGUGG--CCGGAGUa----CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.