miRNA display CGI


Results 1 - 20 of 312 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28771 3' -59 NC_006146.1 + 214 0.7 0.625273
Target:  5'- gCCCCCGCGacgguccccGGGgCGCCccuGGCCUCccccGCg -3'
miRNA:   3'- -GGGGGCGU---------UCUgGUGG---CCGGAGua--CG- -5'
28771 3' -59 NC_006146.1 + 219 0.67 0.786737
Target:  5'- gCCUCCGUuAGugcucuuguuguuACUACCGGCCU--UGCu -3'
miRNA:   3'- -GGGGGCGuUC-------------UGGUGGCCGGAguACG- -5'
28771 3' -59 NC_006146.1 + 485 0.67 0.787622
Target:  5'- gCCCCGCGGGACC-CCccCCUCc-GCc -3'
miRNA:   3'- gGGGGCGUUCUGGuGGccGGAGuaCG- -5'
28771 3' -59 NC_006146.1 + 516 0.67 0.787622
Target:  5'- gCCCCCagGgGAGGCCcggccuccacACaCGGCCUCuccGCg -3'
miRNA:   3'- -GGGGG--CgUUCUGG----------UG-GCCGGAGua-CG- -5'
28771 3' -59 NC_006146.1 + 707 0.75 0.347525
Target:  5'- gCCCCCGCcAGGCC-CCGGCCcCGc-- -3'
miRNA:   3'- -GGGGGCGuUCUGGuGGCCGGaGUacg -5'
28771 3' -59 NC_006146.1 + 729 0.67 0.758724
Target:  5'- gCCCUCGgGAGcccccucaGCCcCCGGCCggcgccgccgcgCGUGCa -3'
miRNA:   3'- -GGGGGCgUUC--------UGGuGGCCGGa-----------GUACG- -5'
28771 3' -59 NC_006146.1 + 808 0.66 0.813507
Target:  5'- cCCCCUGCGGcgccGGCCccucccGCCGGCCaucccCAcGCg -3'
miRNA:   3'- -GGGGGCGUU----CUGG------UGGCCGGa----GUaCG- -5'
28771 3' -59 NC_006146.1 + 916 0.76 0.297998
Target:  5'- gCCCCC-CGGGACCccgggcgcgcGCCGGCCUCccGUc -3'
miRNA:   3'- -GGGGGcGUUCUGG----------UGGCCGGAGuaCG- -5'
28771 3' -59 NC_006146.1 + 1145 0.69 0.645026
Target:  5'- gCCCCCGCGaggguccccGGGCCGCCccgGGgCUCccccGCg -3'
miRNA:   3'- -GGGGGCGU---------UCUGGUGG---CCgGAGua--CG- -5'
28771 3' -59 NC_006146.1 + 1416 0.67 0.787622
Target:  5'- gCCCCGCGGGACC-CCccCCUCc-GCc -3'
miRNA:   3'- gGGGGCGUUCUGGuGGccGGAGuaCG- -5'
28771 3' -59 NC_006146.1 + 1447 0.67 0.787622
Target:  5'- gCCCCCagGgGAGGCCcggccuccacACaCGGCCUCuccGCg -3'
miRNA:   3'- -GGGGG--CgUUCUGG----------UG-GCCGGAGua-CG- -5'
28771 3' -59 NC_006146.1 + 1638 0.75 0.347525
Target:  5'- gCCCCCGCcAGGCC-CCGGCCcCGc-- -3'
miRNA:   3'- -GGGGGCGuUCUGGuGGCCGGaGUacg -5'
28771 3' -59 NC_006146.1 + 1660 0.67 0.758724
Target:  5'- gCCCUCGgGAGcccccucaGCCcCCGGCCggcgccgccgcgCGUGCa -3'
miRNA:   3'- -GGGGGCgUUC--------UGGuGGCCGGa-----------GUACG- -5'
28771 3' -59 NC_006146.1 + 1739 0.72 0.518347
Target:  5'- cCCCCUGCAGG--CGCCGGCCccUCccGCc -3'
miRNA:   3'- -GGGGGCGUUCugGUGGCCGG--AGuaCG- -5'
28771 3' -59 NC_006146.1 + 1848 0.76 0.297998
Target:  5'- gCCCCC-CGGGACCccgggcgcgcGCCGGCCUCccGUc -3'
miRNA:   3'- -GGGGGcGUUCUGG----------UGGCCGGAGuaCG- -5'
28771 3' -59 NC_006146.1 + 2077 0.69 0.645026
Target:  5'- gCCCCCGCGaggguccccGGGCCGCCccgGGgCUCccccGCg -3'
miRNA:   3'- -GGGGGCGU---------UCUGGUGG---CCgGAGua--CG- -5'
28771 3' -59 NC_006146.1 + 2348 0.67 0.787622
Target:  5'- gCCCCGCGGGACC-CCccCCUCc-GCc -3'
miRNA:   3'- gGGGGCGUUCUGGuGGccGGAGuaCG- -5'
28771 3' -59 NC_006146.1 + 2379 0.67 0.787622
Target:  5'- gCCCCCagGgGAGGCCcggccuccacACaCGGCCUCuccGCg -3'
miRNA:   3'- -GGGGG--CgUUCUGG----------UG-GCCGGAGua-CG- -5'
28771 3' -59 NC_006146.1 + 2570 0.75 0.347525
Target:  5'- gCCCCCGCcAGGCC-CCGGCCcCGc-- -3'
miRNA:   3'- -GGGGGCGuUCUGGuGGCCGGaGUacg -5'
28771 3' -59 NC_006146.1 + 2592 0.67 0.758724
Target:  5'- gCCCUCGgGAGcccccucaGCCcCCGGCCggcgccgccgcgCGUGCa -3'
miRNA:   3'- -GGGGGCgUUC--------UGGuGGCCGGa-----------GUACG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.