miRNA display CGI


Results 1 - 20 of 261 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28772 5' -63.8 NC_006146.1 + 126482 1.09 0.000689
Target:  5'- uGCCAGACCCCGGGAGCCCCUCGAGGAa -3'
miRNA:   3'- -CGGUCUGGGGCCCUCGGGGAGCUCCU- -5'
28772 5' -63.8 NC_006146.1 + 18998 0.85 0.040382
Target:  5'- aGCCAGACCCCaguGGGGGcCCCCUCGAGu- -3'
miRNA:   3'- -CGGUCUGGGG---CCCUC-GGGGAGCUCcu -5'
28772 5' -63.8 NC_006146.1 + 34142 0.82 0.06063
Target:  5'- gGCCGGGCCuCCcGGAGCCCCggCGAGGGu -3'
miRNA:   3'- -CGGUCUGG-GGcCCUCGGGGa-GCUCCU- -5'
28772 5' -63.8 NC_006146.1 + 2271 0.79 0.104773
Target:  5'- cGCuCGGGCCCCGGGGaagccccccgcucGCCCCUCGGGu- -3'
miRNA:   3'- -CG-GUCUGGGGCCCU-------------CGGGGAGCUCcu -5'
28772 5' -63.8 NC_006146.1 + 1339 0.79 0.104773
Target:  5'- cGCuCGGGCCCCGGGGaagccccccgcucGCCCCUCGGGu- -3'
miRNA:   3'- -CG-GUCUGGGGCCCU-------------CGGGGAGCUCcu -5'
28772 5' -63.8 NC_006146.1 + 3203 0.79 0.104773
Target:  5'- cGCuCGGGCCCCGGGGaagccccccgcucGCCCCUCGGGu- -3'
miRNA:   3'- -CG-GUCUGGGGCCCU-------------CGGGGAGCUCcu -5'
28772 5' -63.8 NC_006146.1 + 137973 0.79 0.105032
Target:  5'- gGCCGGGCcuCCCGGGGGCCCggCGGGGu -3'
miRNA:   3'- -CGGUCUG--GGGCCCUCGGGgaGCUCCu -5'
28772 5' -63.8 NC_006146.1 + 68940 0.78 0.118747
Target:  5'- aGCCAGAgCCC-GGAGCCCCUagccaGGGGGc -3'
miRNA:   3'- -CGGUCUgGGGcCCUCGGGGAg----CUCCU- -5'
28772 5' -63.8 NC_006146.1 + 44110 0.78 0.124687
Target:  5'- uCCAGGCCCCGGcuGCCCggCGAGGAg -3'
miRNA:   3'- cGGUCUGGGGCCcuCGGGgaGCUCCU- -5'
28772 5' -63.8 NC_006146.1 + 2342 0.77 0.137401
Target:  5'- cGCCGGGCCCCGcGGGaccccccccuccGCCCC-CGAGGc -3'
miRNA:   3'- -CGGUCUGGGGC-CCU------------CGGGGaGCUCCu -5'
28772 5' -63.8 NC_006146.1 + 479 0.77 0.137401
Target:  5'- cGCCGGGCCCCGcGGGaccccccccuccGCCCC-CGAGGc -3'
miRNA:   3'- -CGGUCUGGGGC-CCU------------CGGGGaGCUCCu -5'
28772 5' -63.8 NC_006146.1 + 3274 0.77 0.137401
Target:  5'- cGCCGGGCCCCGcGGGaccccccccuccGCCCC-CGAGGc -3'
miRNA:   3'- -CGGUCUGGGGC-CCU------------CGGGGaGCUCCu -5'
28772 5' -63.8 NC_006146.1 + 1410 0.77 0.137401
Target:  5'- cGCCGGGCCCCGcGGGaccccccccuccGCCCC-CGAGGc -3'
miRNA:   3'- -CGGUCUGGGGC-CCU------------CGGGGaGCUCCu -5'
28772 5' -63.8 NC_006146.1 + 67338 0.76 0.151296
Target:  5'- cCCAGGCCCgGGcGAGCCcauCCUCGGGGu -3'
miRNA:   3'- cGGUCUGGGgCC-CUCGG---GGAGCUCCu -5'
28772 5' -63.8 NC_006146.1 + 65924 0.76 0.162543
Target:  5'- cCCAGAgcccCCUCGGGAGCCCCaggccuuuUUGGGGAa -3'
miRNA:   3'- cGGUCU----GGGGCCCUCGGGG--------AGCUCCU- -5'
28772 5' -63.8 NC_006146.1 + 151163 0.75 0.178706
Target:  5'- --aGGGCCCUGGGAgGCCCCUguccgCGAGGGa -3'
miRNA:   3'- cggUCUGGGGCCCU-CGGGGA-----GCUCCU- -5'
28772 5' -63.8 NC_006146.1 + 145007 0.75 0.178706
Target:  5'- --aGGGCCCUGGGAgGCCCCUguccgCGAGGGa -3'
miRNA:   3'- cggUCUGGGGCCCU-CGGGGA-----GCUCCU- -5'
28772 5' -63.8 NC_006146.1 + 157319 0.75 0.178706
Target:  5'- --aGGGCCCUGGGAgGCCCCUguccgCGAGGGa -3'
miRNA:   3'- cggUCUGGGGCCCU-CGGGGA-----GCUCCU- -5'
28772 5' -63.8 NC_006146.1 + 141929 0.75 0.178706
Target:  5'- --aGGGCCCUGGGAgGCCCCUguccgCGAGGGa -3'
miRNA:   3'- cggUCUGGGGCCCU-CGGGGA-----GCUCCU- -5'
28772 5' -63.8 NC_006146.1 + 148085 0.75 0.178706
Target:  5'- --aGGGCCCUGGGAgGCCCCUguccgCGAGGGa -3'
miRNA:   3'- cggUCUGGGGCCCU-CGGGGA-----GCUCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.