miRNA display CGI


Results 1 - 20 of 261 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28772 5' -63.8 NC_006146.1 + 34142 0.82 0.06063
Target:  5'- gGCCGGGCCuCCcGGAGCCCCggCGAGGGu -3'
miRNA:   3'- -CGGUCUGG-GGcCCUCGGGGa-GCUCCU- -5'
28772 5' -63.8 NC_006146.1 + 135658 0.71 0.314558
Target:  5'- gGCCGGGugcCCCUGGGuccgcuGCCCCgcuccggCGGGGGg -3'
miRNA:   3'- -CGGUCU---GGGGCCCu-----CGGGGa------GCUCCU- -5'
28772 5' -63.8 NC_006146.1 + 135843 0.71 0.314558
Target:  5'- gGCCGGGugcCCCUGGGuccgcuGCCCCgcuccggCGGGGGg -3'
miRNA:   3'- -CGGUCU---GGGGCCCu-----CGGGGa------GCUCCU- -5'
28772 5' -63.8 NC_006146.1 + 153389 0.66 0.62865
Target:  5'- gGCCGGauuguugaggguGCCaaGGGAGUUCC-CGGGGGc -3'
miRNA:   3'- -CGGUC------------UGGggCCCUCGGGGaGCUCCU- -5'
28772 5' -63.8 NC_006146.1 + 52272 0.74 0.205145
Target:  5'- aCUGGGCCCCGGGcGCCCCcacguacUgGAGGAu -3'
miRNA:   3'- cGGUCUGGGGCCCuCGGGG-------AgCUCCU- -5'
28772 5' -63.8 NC_006146.1 + 155470 0.74 0.230668
Target:  5'- cGCCAGGCaggacugcagCCGGGccAGCCCCUCuGAGGc -3'
miRNA:   3'- -CGGUCUGg---------GGCCC--UCGGGGAG-CUCCu -5'
28772 5' -63.8 NC_006146.1 + 94807 0.73 0.241386
Target:  5'- gGCCAGGCCCgGGGGuuGCCCaccaggaaggUGAGGAu -3'
miRNA:   3'- -CGGUCUGGGgCCCU--CGGGga--------GCUCCU- -5'
28772 5' -63.8 NC_006146.1 + 167596 0.72 0.282189
Target:  5'- gGCCGGGccucCCCUGGGGGCCUCgggggCgGAGGGg -3'
miRNA:   3'- -CGGUCU----GGGGCCCUCGGGGa----G-CUCCU- -5'
28772 5' -63.8 NC_006146.1 + 170391 0.72 0.282189
Target:  5'- gGCCGGGccucCCCUGGGGGCCUCgggggCgGAGGGg -3'
miRNA:   3'- -CGGUCU----GGGGCCCUCGGGGa----G-CUCCU- -5'
28772 5' -63.8 NC_006146.1 + 135565 0.71 0.314558
Target:  5'- gGCCGGGugcCCCUGGGuccgcuGCCCCgcuccggCGGGGGg -3'
miRNA:   3'- -CGGUCU---GGGGCCCu-----CGGGGa------GCUCCU- -5'
28772 5' -63.8 NC_006146.1 + 135286 0.71 0.314558
Target:  5'- gGCCGGGugcCCCUGGGuccgcuGCCCCgcuccggCGGGGGg -3'
miRNA:   3'- -CGGUCU---GGGGCCCu-----CGGGGa------GCUCCU- -5'
28772 5' -63.8 NC_006146.1 + 169460 0.72 0.282189
Target:  5'- gGCCGGGccucCCCUGGGGGCCUCgggggCgGAGGGg -3'
miRNA:   3'- -CGGUCU----GGGGCCCUCGGGGa----G-CUCCU- -5'
28772 5' -63.8 NC_006146.1 + 137973 0.79 0.105032
Target:  5'- gGCCGGGCcuCCCGGGGGCCCggCGGGGu -3'
miRNA:   3'- -CGGUCUG--GGGCCCUCGGGgaGCUCCu -5'
28772 5' -63.8 NC_006146.1 + 135379 0.71 0.314558
Target:  5'- gGCCGGGugcCCCUGGGuccgcuGCCCCgcuccggCGGGGGg -3'
miRNA:   3'- -CGGUCU---GGGGCCCu-----CGGGGa------GCUCCU- -5'
28772 5' -63.8 NC_006146.1 + 67338 0.76 0.151296
Target:  5'- cCCAGGCCCgGGcGAGCCcauCCUCGGGGu -3'
miRNA:   3'- cGGUCUGGGgCC-CUCGG---GGAGCUCCu -5'
28772 5' -63.8 NC_006146.1 + 168528 0.72 0.282189
Target:  5'- gGCCGGGccucCCCUGGGGGCCUCgggggCgGAGGGg -3'
miRNA:   3'- -CGGUCU----GGGGCCCUCGGGGa----G-CUCCU- -5'
28772 5' -63.8 NC_006146.1 + 135472 0.71 0.314558
Target:  5'- gGCCGGGugcCCCUGGGuccgcuGCCCCgcuccggCGGGGGg -3'
miRNA:   3'- -CGGUCU---GGGGCCCu-----CGGGGa------GCUCCU- -5'
28772 5' -63.8 NC_006146.1 + 135750 0.71 0.314558
Target:  5'- gGCCGGGugcCCCUGGGuccgcuGCCCCgcuccggCGGGGGg -3'
miRNA:   3'- -CGGUCU---GGGGCCCu-----CGGGGa------GCUCCU- -5'
28772 5' -63.8 NC_006146.1 + 44373 0.75 0.184692
Target:  5'- uGCCAGACCCCcgcccggggggcguGuGGGGCCgggcacggcgccuuCCUCGAGGGg -3'
miRNA:   3'- -CGGUCUGGGG--------------C-CCUCGG--------------GGAGCUCCU- -5'
28772 5' -63.8 NC_006146.1 + 114226 0.73 0.235976
Target:  5'- gGCCAG-CCCCaGGGGGCCcggcaCCUCaGGGAg -3'
miRNA:   3'- -CGGUCuGGGG-CCCUCGG-----GGAGcUCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.