miRNA display CGI


Results 1 - 20 of 261 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28772 5' -63.8 NC_006146.1 + 479 0.77 0.137401
Target:  5'- cGCCGGGCCCCGcGGGaccccccccuccGCCCC-CGAGGc -3'
miRNA:   3'- -CGGUCUGGGGC-CCU------------CGGGGaGCUCCu -5'
28772 5' -63.8 NC_006146.1 + 712 0.74 0.205621
Target:  5'- cGCCAGGCCCCGGcccCgCCCUCG-GGAg -3'
miRNA:   3'- -CGGUCUGGGGCCcucG-GGGAGCuCCU- -5'
28772 5' -63.8 NC_006146.1 + 1339 0.79 0.104773
Target:  5'- cGCuCGGGCCCCGGGGaagccccccgcucGCCCCUCGGGu- -3'
miRNA:   3'- -CG-GUCUGGGGCCCU-------------CGGGGAGCUCcu -5'
28772 5' -63.8 NC_006146.1 + 1410 0.77 0.137401
Target:  5'- cGCCGGGCCCCGcGGGaccccccccuccGCCCC-CGAGGc -3'
miRNA:   3'- -CGGUCUGGGGC-CCU------------CGGGGaGCUCCu -5'
28772 5' -63.8 NC_006146.1 + 1643 0.74 0.205621
Target:  5'- cGCCAGGCCCCGGcccCgCCCUCG-GGAg -3'
miRNA:   3'- -CGGUCUGGGGCCcucG-GGGAGCuCCU- -5'
28772 5' -63.8 NC_006146.1 + 2271 0.79 0.104773
Target:  5'- cGCuCGGGCCCCGGGGaagccccccgcucGCCCCUCGGGu- -3'
miRNA:   3'- -CG-GUCUGGGGCCCU-------------CGGGGAGCUCcu -5'
28772 5' -63.8 NC_006146.1 + 2342 0.77 0.137401
Target:  5'- cGCCGGGCCCCGcGGGaccccccccuccGCCCC-CGAGGc -3'
miRNA:   3'- -CGGUCUGGGGC-CCU------------CGGGGaGCUCCu -5'
28772 5' -63.8 NC_006146.1 + 2575 0.74 0.205621
Target:  5'- cGCCAGGCCCCGGcccCgCCCUCG-GGAg -3'
miRNA:   3'- -CGGUCUGGGGCCcucG-GGGAGCuCCU- -5'
28772 5' -63.8 NC_006146.1 + 3203 0.79 0.104773
Target:  5'- cGCuCGGGCCCCGGGGaagccccccgcucGCCCCUCGGGu- -3'
miRNA:   3'- -CG-GUCUGGGGCCCU-------------CGGGGAGCUCcu -5'
28772 5' -63.8 NC_006146.1 + 3274 0.77 0.137401
Target:  5'- cGCCGGGCCCCGcGGGaccccccccuccGCCCC-CGAGGc -3'
miRNA:   3'- -CGGUCUGGGGC-CCU------------CGGGGaGCUCCu -5'
28772 5' -63.8 NC_006146.1 + 3507 0.74 0.205621
Target:  5'- cGCCAGGCCCCGGcccCgCCCUCG-GGAg -3'
miRNA:   3'- -CGGUCUGGGGCCcucG-GGGAGCuCCU- -5'
28772 5' -63.8 NC_006146.1 + 4917 0.66 0.579926
Target:  5'- aGCCGGACCCucgcuguCGGGuGGCCgugcucugugCCcCGGGGAc -3'
miRNA:   3'- -CGGUCUGGG-------GCCC-UCGG----------GGaGCUCCU- -5'
28772 5' -63.8 NC_006146.1 + 8426 0.7 0.372019
Target:  5'- uCCGGACCCUGGGGaCCaggagagCUCGGGGGc -3'
miRNA:   3'- cGGUCUGGGGCCCUcGGg------GAGCUCCU- -5'
28772 5' -63.8 NC_006146.1 + 9030 0.66 0.62865
Target:  5'- aGCCGGGucUCCCaGGGAGCCUauccacCGuGGAg -3'
miRNA:   3'- -CGGUCU--GGGG-CCCUCGGGga----GCuCCU- -5'
28772 5' -63.8 NC_006146.1 + 9130 0.69 0.411392
Target:  5'- aGCCGGucuCCCaCGGGGcguuGCCUCuuUCGGGGAc -3'
miRNA:   3'- -CGGUCu--GGG-GCCCU----CGGGG--AGCUCCU- -5'
28772 5' -63.8 NC_006146.1 + 10996 0.7 0.395333
Target:  5'- uGCCccccaucuucgaGGGCCCCGGccucGAGgCCCUcugCGAGGAg -3'
miRNA:   3'- -CGG------------UCUGGGGCC----CUCgGGGA---GCUCCU- -5'
28772 5' -63.8 NC_006146.1 + 12450 0.71 0.320675
Target:  5'- aGCCAGGCgCCGGGgccuuucAGgCCCUCGGGc- -3'
miRNA:   3'- -CGGUCUGgGGCCC-------UCgGGGAGCUCcu -5'
28772 5' -63.8 NC_006146.1 + 12841 0.66 0.580876
Target:  5'- gGCCGGACCCgaGGaGGCgCCUggggCGAGGc -3'
miRNA:   3'- -CGGUCUGGGg-CCcUCG-GGGa---GCUCCu -5'
28772 5' -63.8 NC_006146.1 + 13104 0.67 0.575182
Target:  5'- cUCGGACCUggcccuguuuguggaCGGGGGCuCCCgggcccaCGAGGAg -3'
miRNA:   3'- cGGUCUGGG---------------GCCCUCG-GGGa------GCUCCU- -5'
28772 5' -63.8 NC_006146.1 + 13195 0.68 0.479441
Target:  5'- gGCCucGCUCCGGGcGCCuCCUCGGGu- -3'
miRNA:   3'- -CGGucUGGGGCCCuCGG-GGAGCUCcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.