miRNA display CGI


Results 21 - 40 of 101 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28773 3' -51.4 NC_006146.1 + 43423 0.72 0.855857
Target:  5'- cCGCCGUCUccucguccaucaGUAGCCUGCgGgCCGCCa- -3'
miRNA:   3'- -GCGGUAGA------------UAUUGGAUG-UgGGUGGag -5'
28773 3' -51.4 NC_006146.1 + 134504 0.71 0.893037
Target:  5'- cCGCUAUCcAUAugCUGCuGCuCCAUCUCa -3'
miRNA:   3'- -GCGGUAGaUAUugGAUG-UG-GGUGGAG- -5'
28773 3' -51.4 NC_006146.1 + 130456 0.71 0.91248
Target:  5'- gGCCAUU----GCC-GCACCCGCCUa -3'
miRNA:   3'- gCGGUAGauauUGGaUGUGGGUGGAg -5'
28773 3' -51.4 NC_006146.1 + 156858 0.71 0.906247
Target:  5'- aGCCGgcgCUugcGCCUGCcCCCGCCUg -3'
miRNA:   3'- gCGGUa--GAuauUGGAUGuGGGUGGAg -5'
28773 3' -51.4 NC_006146.1 + 47784 0.71 0.886067
Target:  5'- gGCCGUCUGaaAGCCccgucuaGCGCCCACCg- -3'
miRNA:   3'- gCGGUAGAUa-UUGGa------UGUGGGUGGag -5'
28773 3' -51.4 NC_006146.1 + 125453 0.71 0.899765
Target:  5'- gGCacaAUCUGccUGACCUACAguUCCACUUCa -3'
miRNA:   3'- gCGg--UAGAU--AUUGGAUGU--GGGUGGAG- -5'
28773 3' -51.4 NC_006146.1 + 66610 0.71 0.91248
Target:  5'- aGCCcuuuUCUAUAGCCaaggACACCUacaagucccucuGCCUCu -3'
miRNA:   3'- gCGGu---AGAUAUUGGa---UGUGGG------------UGGAG- -5'
28773 3' -51.4 NC_006146.1 + 121500 0.7 0.916099
Target:  5'- cCGCCAagaaccccACCUACAUCCGCCUg -3'
miRNA:   3'- -GCGGUagauau--UGGAUGUGGGUGGAg -5'
28773 3' -51.4 NC_006146.1 + 94292 0.7 0.934889
Target:  5'- aCGUUGUagGUGACCUugACCCucuCCUCg -3'
miRNA:   3'- -GCGGUAgaUAUUGGAugUGGGu--GGAG- -5'
28773 3' -51.4 NC_006146.1 + 130600 0.7 0.934889
Target:  5'- gGCCuaCUuUGGCCUGCccggccucuuugGCCCGCCUCc -3'
miRNA:   3'- gCGGuaGAuAUUGGAUG------------UGGGUGGAG- -5'
28773 3' -51.4 NC_006146.1 + 109092 0.69 0.960992
Target:  5'- cCGCCcgUgccguGCCggcGCGCCCACUUCu -3'
miRNA:   3'- -GCGGuaGauau-UGGa--UGUGGGUGGAG- -5'
28773 3' -51.4 NC_006146.1 + 36461 0.69 0.960992
Target:  5'- aCGCCAUCUAaAGgCUACAgCCUugUUUg -3'
miRNA:   3'- -GCGGUAGAUaUUgGAUGU-GGGugGAG- -5'
28773 3' -51.4 NC_006146.1 + 125807 0.69 0.95725
Target:  5'- aGCCGgagaAUGGCCgGCACCCucCCUCu -3'
miRNA:   3'- gCGGUaga-UAUUGGaUGUGGGu-GGAG- -5'
28773 3' -51.4 NC_006146.1 + 55597 0.69 0.949046
Target:  5'- cCGCCGaggggcuuaUCUAUGACC-ACuCCCGCC-Cg -3'
miRNA:   3'- -GCGGU---------AGAUAUUGGaUGuGGGUGGaG- -5'
28773 3' -51.4 NC_006146.1 + 7531 0.69 0.944577
Target:  5'- -cCCAUCgcUAACCcgAUACCUGCCUCc -3'
miRNA:   3'- gcGGUAGauAUUGGa-UGUGGGUGGAG- -5'
28773 3' -51.4 NC_006146.1 + 155729 0.69 0.944577
Target:  5'- cCGCCGguugggCUGUuguGCCUGCGCCU-UCUCa -3'
miRNA:   3'- -GCGGUa-----GAUAu--UGGAUGUGGGuGGAG- -5'
28773 3' -51.4 NC_006146.1 + 152652 0.69 0.944577
Target:  5'- cCGCCGguugggCUGUuguGCCUGCGCCU-UCUCa -3'
miRNA:   3'- -GCGGUa-----GAUAu--UGGAUGUGGGuGGAG- -5'
28773 3' -51.4 NC_006146.1 + 149574 0.69 0.944577
Target:  5'- cCGCCGguugggCUGUuguGCCUGCGCCU-UCUCa -3'
miRNA:   3'- -GCGGUa-----GAUAu--UGGAUGUGGGuGGAG- -5'
28773 3' -51.4 NC_006146.1 + 146496 0.69 0.944577
Target:  5'- cCGCCGguugggCUGUuguGCCUGCGCCU-UCUCa -3'
miRNA:   3'- -GCGGUa-----GAUAu--UGGAUGUGGGuGGAG- -5'
28773 3' -51.4 NC_006146.1 + 143418 0.69 0.944577
Target:  5'- cCGCCGguugggCUGUuguGCCUGCGCCU-UCUCa -3'
miRNA:   3'- -GCGGUa-----GAUAu--UGGAUGUGGGuGGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.