miRNA display CGI


Results 21 - 40 of 101 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28773 3' -51.4 NC_006146.1 + 27245 0.68 0.970846
Target:  5'- uCGcCCAUCgccuUGcCCUGCGCCCggggccACCUCc -3'
miRNA:   3'- -GC-GGUAGau--AUuGGAUGUGGG------UGGAG- -5'
28773 3' -51.4 NC_006146.1 + 29282 0.74 0.776134
Target:  5'- cCGCCcaGUCUcu-GCCUccaggcaaggGCGCCCGCCUCc -3'
miRNA:   3'- -GCGG--UAGAuauUGGA----------UGUGGGUGGAG- -5'
28773 3' -51.4 NC_006146.1 + 29854 0.66 0.992131
Target:  5'- -uCCAUuUUGUAGCCcuaGC-CCCACCUCu -3'
miRNA:   3'- gcGGUA-GAUAUUGGa--UGuGGGUGGAG- -5'
28773 3' -51.4 NC_006146.1 + 30205 0.68 0.970846
Target:  5'- aGCCAgag--GGCCgcUGCGCCCGCCg- -3'
miRNA:   3'- gCGGUagauaUUGG--AUGUGGGUGGag -5'
28773 3' -51.4 NC_006146.1 + 34200 0.67 0.984977
Target:  5'- uGCCAggcaggGACCUcgcgcCGCCCGCUUCa -3'
miRNA:   3'- gCGGUagaua-UUGGAu----GUGGGUGGAG- -5'
28773 3' -51.4 NC_006146.1 + 35030 0.74 0.756676
Target:  5'- aCGCCcggGUC-AUGACCUGuCACUCGCCUUg -3'
miRNA:   3'- -GCGG---UAGaUAUUGGAU-GUGGGUGGAG- -5'
28773 3' -51.4 NC_006146.1 + 35548 0.68 0.964502
Target:  5'- uGCCAUCUucccCCUccuagaaauuagGCGCCCguGCCUCc -3'
miRNA:   3'- gCGGUAGAuauuGGA------------UGUGGG--UGGAG- -5'
28773 3' -51.4 NC_006146.1 + 36461 0.69 0.960992
Target:  5'- aCGCCAUCUAaAGgCUACAgCCUugUUUg -3'
miRNA:   3'- -GCGGUAGAUaUUgGAUGU-GGGugGAG- -5'
28773 3' -51.4 NC_006146.1 + 43423 0.72 0.855857
Target:  5'- cCGCCGUCUccucguccaucaGUAGCCUGCgGgCCGCCa- -3'
miRNA:   3'- -GCGGUAGA------------UAUUGGAUG-UgGGUGGag -5'
28773 3' -51.4 NC_006146.1 + 46684 0.68 0.964502
Target:  5'- cCGgCAUCgugagugGACUgaaUACACCCACCUg -3'
miRNA:   3'- -GCgGUAGaua----UUGG---AUGUGGGUGGAg -5'
28773 3' -51.4 NC_006146.1 + 47642 0.66 0.992131
Target:  5'- aGCCGUCUcUGGCCgcgGCccgGCCCAgCg- -3'
miRNA:   3'- gCGGUAGAuAUUGGa--UG---UGGGUgGag -5'
28773 3' -51.4 NC_006146.1 + 47784 0.71 0.886067
Target:  5'- gGCCGUCUGaaAGCCccgucuaGCGCCCACCg- -3'
miRNA:   3'- gCGGUAGAUa-UUGGa------UGUGGGUGGag -5'
28773 3' -51.4 NC_006146.1 + 48242 0.66 0.992131
Target:  5'- uGCagaCUAUGACCUACA-UUACCUCc -3'
miRNA:   3'- gCGguaGAUAUUGGAUGUgGGUGGAG- -5'
28773 3' -51.4 NC_006146.1 + 49393 0.67 0.986703
Target:  5'- uGCCGUUgu---CCUGCgucauGCCCACCgUCa -3'
miRNA:   3'- gCGGUAGauauuGGAUG-----UGGGUGG-AG- -5'
28773 3' -51.4 NC_006146.1 + 54185 0.69 0.95725
Target:  5'- uCGCCAgggg-GAUCUGCACCUGCC-Cg -3'
miRNA:   3'- -GCGGUagauaUUGGAUGUGGGUGGaG- -5'
28773 3' -51.4 NC_006146.1 + 55597 0.69 0.949046
Target:  5'- cCGCCGaggggcuuaUCUAUGACC-ACuCCCGCC-Cg -3'
miRNA:   3'- -GCGGU---------AGAUAUUGGaUGuGGGUGGaG- -5'
28773 3' -51.4 NC_006146.1 + 56668 0.67 0.984428
Target:  5'- cCGCCGUCUGcAACgccggaucgccgggCUGCuACCC-CCUCc -3'
miRNA:   3'- -GCGGUAGAUaUUG--------------GAUG-UGGGuGGAG- -5'
28773 3' -51.4 NC_006146.1 + 58986 0.68 0.964502
Target:  5'- gGCCAcCUGcAACCUggccaACAUCUGCCUCc -3'
miRNA:   3'- gCGGUaGAUaUUGGA-----UGUGGGUGGAG- -5'
28773 3' -51.4 NC_006146.1 + 59534 0.66 0.993164
Target:  5'- gGCUcuucaauucccaGUUUGUcGCCcugAUGCCCACCUCg -3'
miRNA:   3'- gCGG------------UAGAUAuUGGa--UGUGGGUGGAG- -5'
28773 3' -51.4 NC_006146.1 + 61775 0.67 0.981021
Target:  5'- gGCC-UCUGUGcCCaaacauCACCCugCUCu -3'
miRNA:   3'- gCGGuAGAUAUuGGau----GUGGGugGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.