miRNA display CGI


Results 41 - 60 of 101 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28773 3' -51.4 NC_006146.1 + 62203 0.68 0.976332
Target:  5'- aGCCAgaagCUAaaagcCCUGCGCCgcaGCCUCu -3'
miRNA:   3'- gCGGUa---GAUauu--GGAUGUGGg--UGGAG- -5'
28773 3' -51.4 NC_006146.1 + 66610 0.71 0.91248
Target:  5'- aGCCcuuuUCUAUAGCCaaggACACCUacaagucccucuGCCUCu -3'
miRNA:   3'- gCGGu---AGAUAUUGGa---UGUGGG------------UGGAG- -5'
28773 3' -51.4 NC_006146.1 + 67801 0.66 0.992131
Target:  5'- gGCCA-----GGCuCUGC-CCCGCCUCg -3'
miRNA:   3'- gCGGUagauaUUG-GAUGuGGGUGGAG- -5'
28773 3' -51.4 NC_006146.1 + 68336 0.69 0.960992
Target:  5'- aCGCUcggCUcgGACCUGCugCUggacGCCUCu -3'
miRNA:   3'- -GCGGua-GAuaUUGGAUGugGG----UGGAG- -5'
28773 3' -51.4 NC_006146.1 + 71891 0.66 0.989828
Target:  5'- gGCCGUCacgcggacccuCCUGCGCgCgGCCUCu -3'
miRNA:   3'- gCGGUAGauauu------GGAUGUG-GgUGGAG- -5'
28773 3' -51.4 NC_006146.1 + 77575 0.68 0.976332
Target:  5'- gGCCGUggCUGaAACC-GCAUCCGCCUg -3'
miRNA:   3'- gCGGUA--GAUaUUGGaUGUGGGUGGAg -5'
28773 3' -51.4 NC_006146.1 + 78983 0.68 0.973692
Target:  5'- aGCCAUCacGUGGagcuaaaCUGCGCCCACUa- -3'
miRNA:   3'- gCGGUAGa-UAUUg------GAUGUGGGUGGag -5'
28773 3' -51.4 NC_006146.1 + 79780 0.68 0.976332
Target:  5'- cCGUCAUCUc---CCUcgGCACCCucACCUCc -3'
miRNA:   3'- -GCGGUAGAuauuGGA--UGUGGG--UGGAG- -5'
28773 3' -51.4 NC_006146.1 + 80947 0.67 0.984977
Target:  5'- gGcCCAUCUGacaauccACCUGUACCCACCa- -3'
miRNA:   3'- gC-GGUAGAUau-----UGGAUGUGGGUGGag -5'
28773 3' -51.4 NC_006146.1 + 84541 0.66 0.993164
Target:  5'- gCGCCGUggcagGUggUUggGCAUCCACCUCc -3'
miRNA:   3'- -GCGGUAga---UAuuGGa-UGUGGGUGGAG- -5'
28773 3' -51.4 NC_006146.1 + 92799 0.66 0.990606
Target:  5'- gGCUucccuGUCUuccgGGCCUcgcaauccuccaccACACCCACUUCg -3'
miRNA:   3'- gCGG-----UAGAua--UUGGA--------------UGUGGGUGGAG- -5'
28773 3' -51.4 NC_006146.1 + 92967 0.67 0.984977
Target:  5'- uGCUAUCUGcucuGCCUgu-CCCGCCUUc -3'
miRNA:   3'- gCGGUAGAUau--UGGAuguGGGUGGAG- -5'
28773 3' -51.4 NC_006146.1 + 94292 0.7 0.934889
Target:  5'- aCGUUGUagGUGACCUugACCCucuCCUCg -3'
miRNA:   3'- -GCGGUAgaUAUUGGAugUGGGu--GGAG- -5'
28773 3' -51.4 NC_006146.1 + 95646 0.77 0.590847
Target:  5'- gGCCAUCcccGUGcACCccACGCCCGCCUCg -3'
miRNA:   3'- gCGGUAGa--UAU-UGGa-UGUGGGUGGAG- -5'
28773 3' -51.4 NC_006146.1 + 99882 0.69 0.942719
Target:  5'- aGCuCGUCcagaauccauACCUACACCCACCc- -3'
miRNA:   3'- gCG-GUAGauau------UGGAUGUGGGUGGag -5'
28773 3' -51.4 NC_006146.1 + 101032 0.67 0.981021
Target:  5'- gGCCGUggaccugGGCCUcuACGCCCgACCUCc -3'
miRNA:   3'- gCGGUAgaua---UUGGA--UGUGGG-UGGAG- -5'
28773 3' -51.4 NC_006146.1 + 102724 0.66 0.990977
Target:  5'- gCGCCcgCguccUGACgCUGCGCCUGCC-Cg -3'
miRNA:   3'- -GCGGuaGau--AUUG-GAUGUGGGUGGaG- -5'
28773 3' -51.4 NC_006146.1 + 103908 0.72 0.863748
Target:  5'- gGCCAUCU----CCUACACCCcauCCUa -3'
miRNA:   3'- gCGGUAGAuauuGGAUGUGGGu--GGAg -5'
28773 3' -51.4 NC_006146.1 + 104053 0.67 0.981659
Target:  5'- aCGCUggaggagAUCUAUGACCUcugccugacggugagGCGCgaguuacuCCGCCUCa -3'
miRNA:   3'- -GCGG-------UAGAUAUUGGA---------------UGUG--------GGUGGAG- -5'
28773 3' -51.4 NC_006146.1 + 106280 0.67 0.978772
Target:  5'- aGaCAUCcuccUGGCCUGCGCCaugaACCUCa -3'
miRNA:   3'- gCgGUAGau--AUUGGAUGUGGg---UGGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.