Results 41 - 60 of 101 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28773 | 3' | -51.4 | NC_006146.1 | + | 29854 | 0.66 | 0.992131 |
Target: 5'- -uCCAUuUUGUAGCCcuaGC-CCCACCUCu -3' miRNA: 3'- gcGGUA-GAUAUUGGa--UGuGGGUGGAG- -5' |
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28773 | 3' | -51.4 | NC_006146.1 | + | 58986 | 0.68 | 0.964502 |
Target: 5'- gGCCAcCUGcAACCUggccaACAUCUGCCUCc -3' miRNA: 3'- gCGGUaGAUaUUGGA-----UGUGGGUGGAG- -5' |
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28773 | 3' | -51.4 | NC_006146.1 | + | 47784 | 0.71 | 0.886067 |
Target: 5'- gGCCGUCUGaaAGCCccgucuaGCGCCCACCg- -3' miRNA: 3'- gCGGUAGAUa-UUGGa------UGUGGGUGGag -5' |
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28773 | 3' | -51.4 | NC_006146.1 | + | 43423 | 0.72 | 0.855857 |
Target: 5'- cCGCCGUCUccucguccaucaGUAGCCUGCgGgCCGCCa- -3' miRNA: 3'- -GCGGUAGA------------UAUUGGAUG-UgGGUGGag -5' |
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28773 | 3' | -51.4 | NC_006146.1 | + | 34200 | 0.67 | 0.984977 |
Target: 5'- uGCCAggcaggGACCUcgcgcCGCCCGCUUCa -3' miRNA: 3'- gCGGUagaua-UUGGAu----GUGGGUGGAG- -5' |
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28773 | 3' | -51.4 | NC_006146.1 | + | 56668 | 0.67 | 0.984428 |
Target: 5'- cCGCCGUCUGcAACgccggaucgccgggCUGCuACCC-CCUCc -3' miRNA: 3'- -GCGGUAGAUaUUG--------------GAUG-UGGGuGGAG- -5' |
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28773 | 3' | -51.4 | NC_006146.1 | + | 24167 | 0.68 | 0.970846 |
Target: 5'- uCGcCCAUCgccuUGcCCUGCGCCCggggccACCUCc -3' miRNA: 3'- -GC-GGUAGau--AUuGGAUGUGGG------UGGAG- -5' |
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28773 | 3' | -51.4 | NC_006146.1 | + | 130600 | 0.7 | 0.934889 |
Target: 5'- gGCCuaCUuUGGCCUGCccggccucuuugGCCCGCCUCc -3' miRNA: 3'- gCGGuaGAuAUUGGAUG------------UGGGUGGAG- -5' |
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28773 | 3' | -51.4 | NC_006146.1 | + | 30205 | 0.68 | 0.970846 |
Target: 5'- aGCCAgag--GGCCgcUGCGCCCGCCg- -3' miRNA: 3'- gCGGUagauaUUGG--AUGUGGGUGGag -5' |
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28773 | 3' | -51.4 | NC_006146.1 | + | 47642 | 0.66 | 0.992131 |
Target: 5'- aGCCGUCUcUGGCCgcgGCccgGCCCAgCg- -3' miRNA: 3'- gCGGUAGAuAUUGGa--UG---UGGGUgGag -5' |
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28773 | 3' | -51.4 | NC_006146.1 | + | 46684 | 0.68 | 0.964502 |
Target: 5'- cCGgCAUCgugagugGACUgaaUACACCCACCUg -3' miRNA: 3'- -GCgGUAGaua----UUGG---AUGUGGGUGGAg -5' |
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28773 | 3' | -51.4 | NC_006146.1 | + | 137126 | 0.68 | 0.964502 |
Target: 5'- -cCCAUCg--GACC-ACGCCCACC-Cg -3' miRNA: 3'- gcGGUAGauaUUGGaUGUGGGUGGaG- -5' |
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28773 | 3' | -51.4 | NC_006146.1 | + | 160057 | 0.68 | 0.966823 |
Target: 5'- aGCCGU--AUGGCCUGCuggcuggcuucggaGCCUAUCUCa -3' miRNA: 3'- gCGGUAgaUAUUGGAUG--------------UGGGUGGAG- -5' |
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28773 | 3' | -51.4 | NC_006146.1 | + | 102724 | 0.66 | 0.990977 |
Target: 5'- gCGCCcgCguccUGACgCUGCGCCUGCC-Cg -3' miRNA: 3'- -GCGGuaGau--AUUG-GAUGUGGGUGGaG- -5' |
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28773 | 3' | -51.4 | NC_006146.1 | + | 23178 | 0.66 | 0.990977 |
Target: 5'- gGCCcgCUAUuACCcagGC-CCCGCCg- -3' miRNA: 3'- gCGGuaGAUAuUGGa--UGuGGGUGGag -5' |
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28773 | 3' | -51.4 | NC_006146.1 | + | 23052 | 0.68 | 0.970846 |
Target: 5'- gCGCCugAUCUgcaacGUcGCCUuCACCgGCCUCa -3' miRNA: 3'- -GCGG--UAGA-----UAuUGGAuGUGGgUGGAG- -5' |
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28773 | 3' | -51.4 | NC_006146.1 | + | 23799 | 0.68 | 0.970846 |
Target: 5'- gGCCcgCUG-AGCCccagcuCGCCCACUUCu -3' miRNA: 3'- gCGGuaGAUaUUGGau----GUGGGUGGAG- -5' |
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28773 | 3' | -51.4 | NC_006146.1 | + | 168419 | 0.68 | 0.976332 |
Target: 5'- gGCCAgCU---GCCUGCcCCCGCCg- -3' miRNA: 3'- gCGGUaGAuauUGGAUGuGGGUGGag -5' |
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28773 | 3' | -51.4 | NC_006146.1 | + | 106280 | 0.67 | 0.978772 |
Target: 5'- aGaCAUCcuccUGGCCUGCGCCaugaACCUCa -3' miRNA: 3'- gCgGUAGau--AUUGGAUGUGGg---UGGAG- -5' |
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28773 | 3' | -51.4 | NC_006146.1 | + | 49393 | 0.67 | 0.986703 |
Target: 5'- uGCCGUUgu---CCUGCgucauGCCCACCgUCa -3' miRNA: 3'- gCGGUAGauauuGGAUG-----UGGGUGG-AG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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