miRNA display CGI


Results 21 - 40 of 101 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28773 3' -51.4 NC_006146.1 + 95646 0.77 0.590847
Target:  5'- gGCCAUCcccGUGcACCccACGCCCGCCUCg -3'
miRNA:   3'- gCGGUAGa--UAU-UGGa-UGUGGGUGGAG- -5'
28773 3' -51.4 NC_006146.1 + 27245 0.68 0.970846
Target:  5'- uCGcCCAUCgccuUGcCCUGCGCCCggggccACCUCc -3'
miRNA:   3'- -GC-GGUAGau--AUuGGAUGUGGG------UGGAG- -5'
28773 3' -51.4 NC_006146.1 + 24167 0.68 0.970846
Target:  5'- uCGcCCAUCgccuUGcCCUGCGCCCggggccACCUCc -3'
miRNA:   3'- -GC-GGUAGau--AUuGGAUGUGGG------UGGAG- -5'
28773 3' -51.4 NC_006146.1 + 94292 0.7 0.934889
Target:  5'- aCGUUGUagGUGACCUugACCCucuCCUCg -3'
miRNA:   3'- -GCGGUAgaUAUUGGAugUGGGu--GGAG- -5'
28773 3' -51.4 NC_006146.1 + 119041 0.72 0.855056
Target:  5'- aGCUggGUCUGUuuuacgcacuGGCCUGCaaccgcaGCCCACCUCc -3'
miRNA:   3'- gCGG--UAGAUA----------UUGGAUG-------UGGGUGGAG- -5'
28773 3' -51.4 NC_006146.1 + 77575 0.68 0.976332
Target:  5'- gGCCGUggCUGaAACC-GCAUCCGCCUg -3'
miRNA:   3'- gCGGUA--GAUaUUGGaUGUGGGUGGAg -5'
28773 3' -51.4 NC_006146.1 + 78983 0.68 0.973692
Target:  5'- aGCCAUCacGUGGagcuaaaCUGCGCCCACUa- -3'
miRNA:   3'- gCGGUAGa-UAUUg------GAUGUGGGUGGag -5'
28773 3' -51.4 NC_006146.1 + 23126 0.74 0.776134
Target:  5'- cCGCCcaGUCUcu-GCCUccaggcaaggGCGCCCGCCUCc -3'
miRNA:   3'- -GCGG--UAGAuauUGGA----------UGUGGGUGGAG- -5'
28773 3' -51.4 NC_006146.1 + 35548 0.68 0.964502
Target:  5'- uGCCAUCUucccCCUccuagaaauuagGCGCCCguGCCUCc -3'
miRNA:   3'- gCGGUAGAuauuGGA------------UGUGGG--UGGAG- -5'
28773 3' -51.4 NC_006146.1 + 54185 0.69 0.95725
Target:  5'- uCGCCAgggg-GAUCUGCACCUGCC-Cg -3'
miRNA:   3'- -GCGGUagauaUUGGAUGUGGGUGGaG- -5'
28773 3' -51.4 NC_006146.1 + 16970 0.74 0.776134
Target:  5'- cCGCCcaGUCUcu-GCCUccaggcaaggGCGCCCGCCUCc -3'
miRNA:   3'- -GCGG--UAGAuauUGGA----------UGUGGGUGGAG- -5'
28773 3' -51.4 NC_006146.1 + 13893 0.74 0.776134
Target:  5'- cCGCCcaGUCUcu-GCCUccaggcaaggGCGCCCGCCUCc -3'
miRNA:   3'- -GCGG--UAGAuauUGGA----------UGUGGGUGGAG- -5'
28773 3' -51.4 NC_006146.1 + 80947 0.67 0.984977
Target:  5'- gGcCCAUCUGacaauccACCUGUACCCACCa- -3'
miRNA:   3'- gC-GGUAGAUau-----UGGAUGUGGGUGGag -5'
28773 3' -51.4 NC_006146.1 + 128385 0.67 0.980143
Target:  5'- aCGCCAUCaaccUGACCggacaaaaguucgACACCCuCUUCg -3'
miRNA:   3'- -GCGGUAGau--AUUGGa------------UGUGGGuGGAG- -5'
28773 3' -51.4 NC_006146.1 + 21089 0.68 0.970846
Target:  5'- uCGcCCAUCgccuUGcCCUGCGCCCggggccACCUCc -3'
miRNA:   3'- -GC-GGUAGau--AUuGGAUGUGGG------UGGAG- -5'
28773 3' -51.4 NC_006146.1 + 47784 0.71 0.886067
Target:  5'- gGCCGUCUGaaAGCCccgucuaGCGCCCACCg- -3'
miRNA:   3'- gCGGUAGAUa-UUGGa------UGUGGGUGGag -5'
28773 3' -51.4 NC_006146.1 + 138860 0.72 0.855857
Target:  5'- aCGCCcggGUC-AUGACCUGgGCCagCGCCUCg -3'
miRNA:   3'- -GCGG---UAGaUAUUGGAUgUGG--GUGGAG- -5'
28773 3' -51.4 NC_006146.1 + 121229 0.74 0.766469
Target:  5'- cCGCCAUCggaaugcucaagUGUAagcaGCCggGCGCCCGCUUCg -3'
miRNA:   3'- -GCGGUAG------------AUAU----UGGa-UGUGGGUGGAG- -5'
28773 3' -51.4 NC_006146.1 + 160203 0.69 0.949046
Target:  5'- uCGCCAgUCUGUGcuGCCUGCaugauGCCCGCg-- -3'
miRNA:   3'- -GCGGU-AGAUAU--UGGAUG-----UGGGUGgag -5'
28773 3' -51.4 NC_006146.1 + 58986 0.68 0.964502
Target:  5'- gGCCAcCUGcAACCUggccaACAUCUGCCUCc -3'
miRNA:   3'- gCGGUaGAUaUUGGA-----UGUGGGUGGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.