miRNA display CGI


Results 21 - 40 of 101 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28773 3' -51.4 NC_006146.1 + 54185 0.69 0.95725
Target:  5'- uCGCCAgggg-GAUCUGCACCUGCC-Cg -3'
miRNA:   3'- -GCGGUagauaUUGGAUGUGGGUGGaG- -5'
28773 3' -51.4 NC_006146.1 + 130600 0.7 0.934889
Target:  5'- gGCCuaCUuUGGCCUGCccggccucuuugGCCCGCCUCc -3'
miRNA:   3'- gCGGuaGAuAUUGGAUG------------UGGGUGGAG- -5'
28773 3' -51.4 NC_006146.1 + 29282 0.74 0.776134
Target:  5'- cCGCCcaGUCUcu-GCCUccaggcaaggGCGCCCGCCUCc -3'
miRNA:   3'- -GCGG--UAGAuauUGGA----------UGUGGGUGGAG- -5'
28773 3' -51.4 NC_006146.1 + 35030 0.74 0.756676
Target:  5'- aCGCCcggGUC-AUGACCUGuCACUCGCCUUg -3'
miRNA:   3'- -GCGG---UAGaUAUUGGAU-GUGGGUGGAG- -5'
28773 3' -51.4 NC_006146.1 + 3129 0.68 0.973692
Target:  5'- cCGUgCGUCUcgAGCCaugcGCGCCCACC-Cg -3'
miRNA:   3'- -GCG-GUAGAuaUUGGa---UGUGGGUGGaG- -5'
28773 3' -51.4 NC_006146.1 + 18011 0.68 0.970846
Target:  5'- uCGcCCAUCgccuUGcCCUGCGCCCggggccACCUCc -3'
miRNA:   3'- -GC-GGUAGau--AUuGGAUGUGGG------UGGAG- -5'
28773 3' -51.4 NC_006146.1 + 156858 0.71 0.906247
Target:  5'- aGCCGgcgCUugcGCCUGCcCCCGCCUg -3'
miRNA:   3'- gCGGUa--GAuauUGGAUGuGGGUGGAg -5'
28773 3' -51.4 NC_006146.1 + 119671 0.74 0.756676
Target:  5'- gGCCAUCaccAACCU-CACCCGCCa- -3'
miRNA:   3'- gCGGUAGauaUUGGAuGUGGGUGGag -5'
28773 3' -51.4 NC_006146.1 + 14934 0.68 0.970846
Target:  5'- uCGcCCAUCgccuUGcCCUGCGCCCggggccACCUCc -3'
miRNA:   3'- -GC-GGUAGau--AUuGGAUGUGGG------UGGAG- -5'
28773 3' -51.4 NC_006146.1 + 150584 0.75 0.726638
Target:  5'- gGCCAUCgu---CCaGCACCCGCCUg -3'
miRNA:   3'- gCGGUAGauauuGGaUGUGGGUGGAg -5'
28773 3' -51.4 NC_006146.1 + 130456 0.71 0.91248
Target:  5'- gGCCAUU----GCC-GCACCCGCCUa -3'
miRNA:   3'- gCGGUAGauauUGGaUGUGGGUGGAg -5'
28773 3' -51.4 NC_006146.1 + 109412 0.69 0.960992
Target:  5'- gGCCGUCggucagGGCCcguUugGCCC-CCUCa -3'
miRNA:   3'- gCGGUAGaua---UUGG---AugUGGGuGGAG- -5'
28773 3' -51.4 NC_006146.1 + 43423 0.72 0.855857
Target:  5'- cCGCCGUCUccucguccaucaGUAGCCUGCgGgCCGCCa- -3'
miRNA:   3'- -GCGGUAGA------------UAUUGGAUG-UgGGUGGag -5'
28773 3' -51.4 NC_006146.1 + 151317 0.73 0.804274
Target:  5'- gGCCAggagCUGUccucgcgccgGACCgagagguCGCCCACCUCg -3'
miRNA:   3'- gCGGUa---GAUA----------UUGGau-----GUGGGUGGAG- -5'
28773 3' -51.4 NC_006146.1 + 20048 0.74 0.776134
Target:  5'- cCGCCcaGUCUcu-GCCUccaggcaaggGCGCCCGCCUCc -3'
miRNA:   3'- -GCGG--UAGAuauUGGA----------UGUGGGUGGAG- -5'
28773 3' -51.4 NC_006146.1 + 121229 0.74 0.766469
Target:  5'- cCGCCAUCggaaugcucaagUGUAagcaGCCggGCGCCCGCUUCg -3'
miRNA:   3'- -GCGGUAG------------AUAU----UGGa-UGUGGGUGGAG- -5'
28773 3' -51.4 NC_006146.1 + 56668 0.67 0.984428
Target:  5'- cCGCCGUCUGcAACgccggaucgccgggCUGCuACCC-CCUCc -3'
miRNA:   3'- -GCGGUAGAUaUUG--------------GAUG-UGGGuGGAG- -5'
28773 3' -51.4 NC_006146.1 + 62203 0.68 0.976332
Target:  5'- aGCCAgaagCUAaaagcCCUGCGCCgcaGCCUCu -3'
miRNA:   3'- gCGGUa---GAUauu--GGAUGUGGg--UGGAG- -5'
28773 3' -51.4 NC_006146.1 + 30205 0.68 0.970846
Target:  5'- aGCCAgag--GGCCgcUGCGCCCGCCg- -3'
miRNA:   3'- gCGGUagauaUUGG--AUGUGGGUGGag -5'
28773 3' -51.4 NC_006146.1 + 21089 0.68 0.970846
Target:  5'- uCGcCCAUCgccuUGcCCUGCGCCCggggccACCUCc -3'
miRNA:   3'- -GC-GGUAGau--AUuGGAUGUGGG------UGGAG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.