Results 21 - 40 of 101 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28773 | 3' | -51.4 | NC_006146.1 | + | 61775 | 0.67 | 0.981021 |
Target: 5'- gGCC-UCUGUGcCCaaacauCACCCugCUCu -3' miRNA: 3'- gCGGuAGAUAUuGGau----GUGGGugGAG- -5' |
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28773 | 3' | -51.4 | NC_006146.1 | + | 117909 | 0.66 | 0.993164 |
Target: 5'- gGCCAgaagaggGGCCUcgagACGCCCGCCcCg -3' miRNA: 3'- gCGGUagaua--UUGGA----UGUGGGUGGaG- -5' |
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28773 | 3' | -51.4 | NC_006146.1 | + | 14232 | 0.66 | 0.992131 |
Target: 5'- gGCCuUCUG--GCCgaguuggACGCCCuCCUCc -3' miRNA: 3'- gCGGuAGAUauUGGa------UGUGGGuGGAG- -5' |
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28773 | 3' | -51.4 | NC_006146.1 | + | 48242 | 0.66 | 0.992131 |
Target: 5'- uGCagaCUAUGACCUACA-UUACCUCc -3' miRNA: 3'- gCGguaGAUAUUGGAUGUgGGUGGAG- -5' |
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28773 | 3' | -51.4 | NC_006146.1 | + | 102724 | 0.66 | 0.990977 |
Target: 5'- gCGCCcgCguccUGACgCUGCGCCUGCC-Cg -3' miRNA: 3'- -GCGGuaGau--AUUG-GAUGUGGGUGGaG- -5' |
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28773 | 3' | -51.4 | NC_006146.1 | + | 23178 | 0.66 | 0.990977 |
Target: 5'- gGCCcgCUAUuACCcagGC-CCCGCCg- -3' miRNA: 3'- gCGGuaGAUAuUGGa--UGuGGGUGGag -5' |
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28773 | 3' | -51.4 | NC_006146.1 | + | 71891 | 0.66 | 0.989828 |
Target: 5'- gGCCGUCacgcggacccuCCUGCGCgCgGCCUCu -3' miRNA: 3'- gCGGUAGauauu------GGAUGUG-GgUGGAG- -5' |
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28773 | 3' | -51.4 | NC_006146.1 | + | 136863 | 0.66 | 0.989693 |
Target: 5'- gGCCGgcaUAggccccggGACC-ACGCCCGCCUg -3' miRNA: 3'- gCGGUag-AUa-------UUGGaUGUGGGUGGAg -5' |
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28773 | 3' | -51.4 | NC_006146.1 | + | 122049 | 0.66 | 0.989693 |
Target: 5'- gGCCGaCg---GCUUcGCGCCCGCCUCc -3' miRNA: 3'- gCGGUaGauauUGGA-UGUGGGUGGAG- -5' |
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28773 | 3' | -51.4 | NC_006146.1 | + | 113836 | 0.66 | 0.989693 |
Target: 5'- gGCCAUCcgcgucaGGCCcccuCCCGCCUCa -3' miRNA: 3'- gCGGUAGaua----UUGGauguGGGUGGAG- -5' |
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28773 | 3' | -51.4 | NC_006146.1 | + | 12762 | 0.66 | 0.989282 |
Target: 5'- aGCCcacCUGUGACCUGCcggaccuggacgcgGCCCugCa- -3' miRNA: 3'- gCGGua-GAUAUUGGAUG--------------UGGGugGag -5' |
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28773 | 3' | -51.4 | NC_006146.1 | + | 49393 | 0.67 | 0.986703 |
Target: 5'- uGCCGUUgu---CCUGCgucauGCCCACCgUCa -3' miRNA: 3'- gCGGUAGauauuGGAUG-----UGGGUGG-AG- -5' |
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28773 | 3' | -51.4 | NC_006146.1 | + | 3806 | 0.67 | 0.984977 |
Target: 5'- aCGCgGgggAUGGCC-ACGCCCcCCUCa -3' miRNA: 3'- -GCGgUagaUAUUGGaUGUGGGuGGAG- -5' |
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28773 | 3' | -51.4 | NC_006146.1 | + | 13214 | 0.67 | 0.984977 |
Target: 5'- aCGCCAUCcugAaGGCCUGCggccagACCCAgUUCu -3' miRNA: 3'- -GCGGUAGa--UaUUGGAUG------UGGGUgGAG- -5' |
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28773 | 3' | -51.4 | NC_006146.1 | + | 92967 | 0.67 | 0.984977 |
Target: 5'- uGCUAUCUGcucuGCCUgu-CCCGCCUUc -3' miRNA: 3'- gCGGUAGAUau--UGGAuguGGGUGGAG- -5' |
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28773 | 3' | -51.4 | NC_006146.1 | + | 20800 | 0.67 | 0.984428 |
Target: 5'- aCGCCGUCUacggcuucacugggGUGGCCaACGgccucuuccCCUGCCUCu -3' miRNA: 3'- -GCGGUAGA--------------UAUUGGaUGU---------GGGUGGAG- -5' |
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28773 | 3' | -51.4 | NC_006146.1 | + | 10919 | 0.67 | 0.983086 |
Target: 5'- gGCCAgaccccaaCUGcgggcuCCUGCGCgCCACCUCc -3' miRNA: 3'- gCGGUa-------GAUauu---GGAUGUG-GGUGGAG- -5' |
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28773 | 3' | -51.4 | NC_006146.1 | + | 104053 | 0.67 | 0.981659 |
Target: 5'- aCGCUggaggagAUCUAUGACCUcugccugacggugagGCGCgaguuacuCCGCCUCa -3' miRNA: 3'- -GCGG-------UAGAUAUUGGA---------------UGUG--------GGUGGAG- -5' |
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28773 | 3' | -51.4 | NC_006146.1 | + | 101032 | 0.67 | 0.981021 |
Target: 5'- gGCCGUggaccugGGCCUcuACGCCCgACCUCc -3' miRNA: 3'- gCGGUAgaua---UUGGA--UGUGGG-UGGAG- -5' |
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28773 | 3' | -51.4 | NC_006146.1 | + | 165684 | 0.67 | 0.978772 |
Target: 5'- gGCCGgcaagGACCUGCACCCcuAgCUCc -3' miRNA: 3'- gCGGUagauaUUGGAUGUGGG--UgGAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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