miRNA display CGI


Results 1 - 20 of 101 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28773 3' -51.4 NC_006146.1 + 165684 0.67 0.978772
Target:  5'- gGCCGgcaagGACCUGCACCCcuAgCUCc -3'
miRNA:   3'- gCGGUagauaUUGGAUGUGGG--UgGAG- -5'
28773 3' -51.4 NC_006146.1 + 3806 0.67 0.984977
Target:  5'- aCGCgGgggAUGGCC-ACGCCCcCCUCa -3'
miRNA:   3'- -GCGgUagaUAUUGGaUGUGGGuGGAG- -5'
28773 3' -51.4 NC_006146.1 + 13214 0.67 0.984977
Target:  5'- aCGCCAUCcugAaGGCCUGCggccagACCCAgUUCu -3'
miRNA:   3'- -GCGGUAGa--UaUUGGAUG------UGGGUgGAG- -5'
28773 3' -51.4 NC_006146.1 + 92967 0.67 0.984977
Target:  5'- uGCUAUCUGcucuGCCUgu-CCCGCCUUc -3'
miRNA:   3'- gCGGUAGAUau--UGGAuguGGGUGGAG- -5'
28773 3' -51.4 NC_006146.1 + 20800 0.67 0.984428
Target:  5'- aCGCCGUCUacggcuucacugggGUGGCCaACGgccucuuccCCUGCCUCu -3'
miRNA:   3'- -GCGGUAGA--------------UAUUGGaUGU---------GGGUGGAG- -5'
28773 3' -51.4 NC_006146.1 + 10919 0.67 0.983086
Target:  5'- gGCCAgaccccaaCUGcgggcuCCUGCGCgCCACCUCc -3'
miRNA:   3'- gCGGUa-------GAUauu---GGAUGUG-GGUGGAG- -5'
28773 3' -51.4 NC_006146.1 + 104053 0.67 0.981659
Target:  5'- aCGCUggaggagAUCUAUGACCUcugccugacggugagGCGCgaguuacuCCGCCUCa -3'
miRNA:   3'- -GCGG-------UAGAUAUUGGA---------------UGUG--------GGUGGAG- -5'
28773 3' -51.4 NC_006146.1 + 101032 0.67 0.981021
Target:  5'- gGCCGUggaccugGGCCUcuACGCCCgACCUCc -3'
miRNA:   3'- gCGGUAgaua---UUGGA--UGUGGG-UGGAG- -5'
28773 3' -51.4 NC_006146.1 + 61775 0.67 0.981021
Target:  5'- gGCC-UCUGUGcCCaaacauCACCCugCUCu -3'
miRNA:   3'- gCGGuAGAUAUuGGau----GUGGGugGAG- -5'
28773 3' -51.4 NC_006146.1 + 49393 0.67 0.986703
Target:  5'- uGCCGUUgu---CCUGCgucauGCCCACCgUCa -3'
miRNA:   3'- gCGGUAGauauuGGAUG-----UGGGUGG-AG- -5'
28773 3' -51.4 NC_006146.1 + 12762 0.66 0.989282
Target:  5'- aGCCcacCUGUGACCUGCcggaccuggacgcgGCCCugCa- -3'
miRNA:   3'- gCGGua-GAUAUUGGAUG--------------UGGGugGag -5'
28773 3' -51.4 NC_006146.1 + 113836 0.66 0.989693
Target:  5'- gGCCAUCcgcgucaGGCCcccuCCCGCCUCa -3'
miRNA:   3'- gCGGUAGaua----UUGGauguGGGUGGAG- -5'
28773 3' -51.4 NC_006146.1 + 126944 0.66 0.992131
Target:  5'- cCGCCAUCagGUAGCaUACACUaucccgCGCCUUu -3'
miRNA:   3'- -GCGGUAGa-UAUUGgAUGUGG------GUGGAG- -5'
28773 3' -51.4 NC_006146.1 + 14232 0.66 0.992131
Target:  5'- gGCCuUCUG--GCCgaguuggACGCCCuCCUCc -3'
miRNA:   3'- gCGGuAGAUauUGGa------UGUGGGuGGAG- -5'
28773 3' -51.4 NC_006146.1 + 48242 0.66 0.992131
Target:  5'- uGCagaCUAUGACCUACA-UUACCUCc -3'
miRNA:   3'- gCGguaGAUAUUGGAUGUgGGUGGAG- -5'
28773 3' -51.4 NC_006146.1 + 102724 0.66 0.990977
Target:  5'- gCGCCcgCguccUGACgCUGCGCCUGCC-Cg -3'
miRNA:   3'- -GCGGuaGau--AUUG-GAUGUGGGUGGaG- -5'
28773 3' -51.4 NC_006146.1 + 23178 0.66 0.990977
Target:  5'- gGCCcgCUAUuACCcagGC-CCCGCCg- -3'
miRNA:   3'- gCGGuaGAUAuUGGa--UGuGGGUGGag -5'
28773 3' -51.4 NC_006146.1 + 71891 0.66 0.989828
Target:  5'- gGCCGUCacgcggacccuCCUGCGCgCgGCCUCu -3'
miRNA:   3'- gCGGUAGauauu------GGAUGUG-GgUGGAG- -5'
28773 3' -51.4 NC_006146.1 + 136863 0.66 0.989693
Target:  5'- gGCCGgcaUAggccccggGACC-ACGCCCGCCUg -3'
miRNA:   3'- gCGGUag-AUa-------UUGGaUGUGGGUGGAg -5'
28773 3' -51.4 NC_006146.1 + 122049 0.66 0.989693
Target:  5'- gGCCGaCg---GCUUcGCGCCCGCCUCc -3'
miRNA:   3'- gCGGUaGauauUGGA-UGUGGGUGGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.