miRNA display CGI


Results 1 - 20 of 101 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28773 3' -51.4 NC_006146.1 + 12762 0.66 0.989282
Target:  5'- aGCCcacCUGUGACCUGCcggaccuggacgcgGCCCugCa- -3'
miRNA:   3'- gCGGua-GAUAUUGGAUG--------------UGGGugGag -5'
28773 3' -51.4 NC_006146.1 + 111566 0.66 0.988272
Target:  5'- gGCuCAUCUAU-GCCgucaACACCgccaGCCUCu -3'
miRNA:   3'- gCG-GUAGAUAuUGGa---UGUGGg---UGGAG- -5'
28773 3' -51.4 NC_006146.1 + 92799 0.66 0.990606
Target:  5'- gGCUucccuGUCUuccgGGCCUcgcaauccuccaccACACCCACUUCg -3'
miRNA:   3'- gCGG-----UAGAua--UUGGA--------------UGUGGGUGGAG- -5'
28773 3' -51.4 NC_006146.1 + 29854 0.66 0.992131
Target:  5'- -uCCAUuUUGUAGCCcuaGC-CCCACCUCu -3'
miRNA:   3'- gcGGUA-GAUAUUGGa--UGuGGGUGGAG- -5'
28773 3' -51.4 NC_006146.1 + 59534 0.66 0.993164
Target:  5'- gGCUcuucaauucccaGUUUGUcGCCcugAUGCCCACCUCg -3'
miRNA:   3'- gCGG------------UAGAUAuUGGa--UGUGGGUGGAG- -5'
28773 3' -51.4 NC_006146.1 + 143121 0.66 0.990977
Target:  5'- aGCCG---GUGACCUGagACCCACCc- -3'
miRNA:   3'- gCGGUagaUAUUGGAUg-UGGGUGGag -5'
28773 3' -51.4 NC_006146.1 + 47642 0.66 0.992131
Target:  5'- aGCCGUCUcUGGCCgcgGCccgGCCCAgCg- -3'
miRNA:   3'- gCGGUAGAuAUUGGa--UG---UGGGUgGag -5'
28773 3' -51.4 NC_006146.1 + 67801 0.66 0.992131
Target:  5'- gGCCA-----GGCuCUGC-CCCGCCUCg -3'
miRNA:   3'- gCGGUagauaUUG-GAUGuGGGUGGAG- -5'
28773 3' -51.4 NC_006146.1 + 84541 0.66 0.993164
Target:  5'- gCGCCGUggcagGUggUUggGCAUCCACCUCc -3'
miRNA:   3'- -GCGGUAga---UAuuGGa-UGUGGGUGGAG- -5'
28773 3' -51.4 NC_006146.1 + 117909 0.66 0.993164
Target:  5'- gGCCAgaagaggGGCCUcgagACGCCCGCCcCg -3'
miRNA:   3'- gCGGUagaua--UUGGA----UGUGGGUGGaG- -5'
28773 3' -51.4 NC_006146.1 + 113836 0.66 0.989693
Target:  5'- gGCCAUCcgcgucaGGCCcccuCCCGCCUCa -3'
miRNA:   3'- gCGGUAGaua----UUGGauguGGGUGGAG- -5'
28773 3' -51.4 NC_006146.1 + 122049 0.66 0.989693
Target:  5'- gGCCGaCg---GCUUcGCGCCCGCCUCc -3'
miRNA:   3'- gCGGUaGauauUGGA-UGUGGGUGGAG- -5'
28773 3' -51.4 NC_006146.1 + 136863 0.66 0.989693
Target:  5'- gGCCGgcaUAggccccggGACC-ACGCCCGCCUg -3'
miRNA:   3'- gCGGUag-AUa-------UUGGaUGUGGGUGGAg -5'
28773 3' -51.4 NC_006146.1 + 71891 0.66 0.989828
Target:  5'- gGCCGUCacgcggacccuCCUGCGCgCgGCCUCu -3'
miRNA:   3'- gCGGUAGauauu------GGAUGUG-GgUGGAG- -5'
28773 3' -51.4 NC_006146.1 + 23178 0.66 0.990977
Target:  5'- gGCCcgCUAUuACCcagGC-CCCGCCg- -3'
miRNA:   3'- gCGGuaGAUAuUGGa--UGuGGGUGGag -5'
28773 3' -51.4 NC_006146.1 + 102724 0.66 0.990977
Target:  5'- gCGCCcgCguccUGACgCUGCGCCUGCC-Cg -3'
miRNA:   3'- -GCGGuaGau--AUUG-GAUGUGGGUGGaG- -5'
28773 3' -51.4 NC_006146.1 + 48242 0.66 0.992131
Target:  5'- uGCagaCUAUGACCUACA-UUACCUCc -3'
miRNA:   3'- gCGguaGAUAUUGGAUGUgGGUGGAG- -5'
28773 3' -51.4 NC_006146.1 + 14232 0.66 0.992131
Target:  5'- gGCCuUCUG--GCCgaguuggACGCCCuCCUCc -3'
miRNA:   3'- gCGGuAGAUauUGGa------UGUGGGuGGAG- -5'
28773 3' -51.4 NC_006146.1 + 126944 0.66 0.992131
Target:  5'- cCGCCAUCagGUAGCaUACACUaucccgCGCCUUu -3'
miRNA:   3'- -GCGGUAGa-UAUUGgAUGUGG------GUGGAG- -5'
28773 3' -51.4 NC_006146.1 + 49393 0.67 0.986703
Target:  5'- uGCCGUUgu---CCUGCgucauGCCCACCgUCa -3'
miRNA:   3'- gCGGUAGauauuGGAUG-----UGGGUGG-AG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.