miRNA display CGI


Results 1 - 20 of 101 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28773 3' -51.4 NC_006146.1 + 3129 0.68 0.973692
Target:  5'- cCGUgCGUCUcgAGCCaugcGCGCCCACC-Cg -3'
miRNA:   3'- -GCG-GUAGAuaUUGGa---UGUGGGUGGaG- -5'
28773 3' -51.4 NC_006146.1 + 3806 0.67 0.984977
Target:  5'- aCGCgGgggAUGGCC-ACGCCCcCCUCa -3'
miRNA:   3'- -GCGgUagaUAUUGGaUGUGGGuGGAG- -5'
28773 3' -51.4 NC_006146.1 + 7531 0.69 0.944577
Target:  5'- -cCCAUCgcUAACCcgAUACCUGCCUCc -3'
miRNA:   3'- gcGGUAGauAUUGGa-UGUGGGUGGAG- -5'
28773 3' -51.4 NC_006146.1 + 10919 0.67 0.983086
Target:  5'- gGCCAgaccccaaCUGcgggcuCCUGCGCgCCACCUCc -3'
miRNA:   3'- gCGGUa-------GAUauu---GGAUGUG-GGUGGAG- -5'
28773 3' -51.4 NC_006146.1 + 12762 0.66 0.989282
Target:  5'- aGCCcacCUGUGACCUGCcggaccuggacgcgGCCCugCa- -3'
miRNA:   3'- gCGGua-GAUAUUGGAUG--------------UGGGugGag -5'
28773 3' -51.4 NC_006146.1 + 13214 0.67 0.984977
Target:  5'- aCGCCAUCcugAaGGCCUGCggccagACCCAgUUCu -3'
miRNA:   3'- -GCGGUAGa--UaUUGGAUG------UGGGUgGAG- -5'
28773 3' -51.4 NC_006146.1 + 13893 0.74 0.776134
Target:  5'- cCGCCcaGUCUcu-GCCUccaggcaaggGCGCCCGCCUCc -3'
miRNA:   3'- -GCGG--UAGAuauUGGA----------UGUGGGUGGAG- -5'
28773 3' -51.4 NC_006146.1 + 14232 0.66 0.992131
Target:  5'- gGCCuUCUG--GCCgaguuggACGCCCuCCUCc -3'
miRNA:   3'- gCGGuAGAUauUGGa------UGUGGGuGGAG- -5'
28773 3' -51.4 NC_006146.1 + 14934 0.68 0.970846
Target:  5'- uCGcCCAUCgccuUGcCCUGCGCCCggggccACCUCc -3'
miRNA:   3'- -GC-GGUAGau--AUuGGAUGUGGG------UGGAG- -5'
28773 3' -51.4 NC_006146.1 + 16970 0.74 0.776134
Target:  5'- cCGCCcaGUCUcu-GCCUccaggcaaggGCGCCCGCCUCc -3'
miRNA:   3'- -GCGG--UAGAuauUGGA----------UGUGGGUGGAG- -5'
28773 3' -51.4 NC_006146.1 + 18011 0.68 0.970846
Target:  5'- uCGcCCAUCgccuUGcCCUGCGCCCggggccACCUCc -3'
miRNA:   3'- -GC-GGUAGau--AUuGGAUGUGGG------UGGAG- -5'
28773 3' -51.4 NC_006146.1 + 20048 0.74 0.776134
Target:  5'- cCGCCcaGUCUcu-GCCUccaggcaaggGCGCCCGCCUCc -3'
miRNA:   3'- -GCGG--UAGAuauUGGA----------UGUGGGUGGAG- -5'
28773 3' -51.4 NC_006146.1 + 20800 0.67 0.984428
Target:  5'- aCGCCGUCUacggcuucacugggGUGGCCaACGgccucuuccCCUGCCUCu -3'
miRNA:   3'- -GCGGUAGA--------------UAUUGGaUGU---------GGGUGGAG- -5'
28773 3' -51.4 NC_006146.1 + 21089 0.68 0.970846
Target:  5'- uCGcCCAUCgccuUGcCCUGCGCCCggggccACCUCc -3'
miRNA:   3'- -GC-GGUAGau--AUuGGAUGUGGG------UGGAG- -5'
28773 3' -51.4 NC_006146.1 + 23052 0.68 0.970846
Target:  5'- gCGCCugAUCUgcaacGUcGCCUuCACCgGCCUCa -3'
miRNA:   3'- -GCGG--UAGA-----UAuUGGAuGUGGgUGGAG- -5'
28773 3' -51.4 NC_006146.1 + 23126 0.74 0.776134
Target:  5'- cCGCCcaGUCUcu-GCCUccaggcaaggGCGCCCGCCUCc -3'
miRNA:   3'- -GCGG--UAGAuauUGGA----------UGUGGGUGGAG- -5'
28773 3' -51.4 NC_006146.1 + 23178 0.66 0.990977
Target:  5'- gGCCcgCUAUuACCcagGC-CCCGCCg- -3'
miRNA:   3'- gCGGuaGAUAuUGGa--UGuGGGUGGag -5'
28773 3' -51.4 NC_006146.1 + 23799 0.68 0.970846
Target:  5'- gGCCcgCUG-AGCCccagcuCGCCCACUUCu -3'
miRNA:   3'- gCGGuaGAUaUUGGau----GUGGGUGGAG- -5'
28773 3' -51.4 NC_006146.1 + 24167 0.68 0.970846
Target:  5'- uCGcCCAUCgccuUGcCCUGCGCCCggggccACCUCc -3'
miRNA:   3'- -GC-GGUAGau--AUuGGAUGUGGG------UGGAG- -5'
28773 3' -51.4 NC_006146.1 + 26204 0.74 0.776134
Target:  5'- cCGCCcaGUCUcu-GCCUccaggcaaggGCGCCCGCCUCc -3'
miRNA:   3'- -GCGG--UAGAuauUGGA----------UGUGGGUGGAG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.