miRNA display CGI


Results 1 - 20 of 101 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28773 3' -51.4 NC_006146.1 + 168419 0.68 0.976332
Target:  5'- gGCCAgCU---GCCUGCcCCCGCCg- -3'
miRNA:   3'- gCGGUaGAuauUGGAUGuGGGUGGag -5'
28773 3' -51.4 NC_006146.1 + 166203 0.74 0.765495
Target:  5'- aGCCGUgCUGcaccucaaacaucUGAUCUGCcCCCGCCUCg -3'
miRNA:   3'- gCGGUA-GAU-------------AUUGGAUGuGGGUGGAG- -5'
28773 3' -51.4 NC_006146.1 + 165684 0.67 0.978772
Target:  5'- gGCCGgcaagGACCUGCACCCcuAgCUCc -3'
miRNA:   3'- gCGGUagauaUUGGAUGUGGG--UgGAG- -5'
28773 3' -51.4 NC_006146.1 + 161437 0.68 0.973692
Target:  5'- uGCCAgagggCgcgGACCccGCGCCCACCg- -3'
miRNA:   3'- gCGGUa----GauaUUGGa-UGUGGGUGGag -5'
28773 3' -51.4 NC_006146.1 + 160203 0.69 0.949046
Target:  5'- uCGCCAgUCUGUGcuGCCUGCaugauGCCCGCg-- -3'
miRNA:   3'- -GCGGU-AGAUAU--UGGAUG-----UGGGUGgag -5'
28773 3' -51.4 NC_006146.1 + 160057 0.68 0.966823
Target:  5'- aGCCGU--AUGGCCUGCuggcuggcuucggaGCCUAUCUCa -3'
miRNA:   3'- gCGGUAgaUAUUGGAUG--------------UGGGUGGAG- -5'
28773 3' -51.4 NC_006146.1 + 156858 0.71 0.906247
Target:  5'- aGCCGgcgCUugcGCCUGCcCCCGCCUg -3'
miRNA:   3'- gCGGUa--GAuauUGGAUGuGGGUGGAg -5'
28773 3' -51.4 NC_006146.1 + 155729 0.69 0.944577
Target:  5'- cCGCCGguugggCUGUuguGCCUGCGCCU-UCUCa -3'
miRNA:   3'- -GCGGUa-----GAUAu--UGGAUGUGGGuGGAG- -5'
28773 3' -51.4 NC_006146.1 + 152652 0.69 0.944577
Target:  5'- cCGCCGguugggCUGUuguGCCUGCGCCU-UCUCa -3'
miRNA:   3'- -GCGGUa-----GAUAu--UGGAUGUGGGuGGAG- -5'
28773 3' -51.4 NC_006146.1 + 151317 0.73 0.804274
Target:  5'- gGCCAggagCUGUccucgcgccgGACCgagagguCGCCCACCUCg -3'
miRNA:   3'- gCGGUa---GAUA----------UUGGau-----GUGGGUGGAG- -5'
28773 3' -51.4 NC_006146.1 + 150584 0.75 0.726638
Target:  5'- gGCCAUCgu---CCaGCACCCGCCUg -3'
miRNA:   3'- gCGGUAGauauuGGaUGUGGGUGGAg -5'
28773 3' -51.4 NC_006146.1 + 149574 0.69 0.944577
Target:  5'- cCGCCGguugggCUGUuguGCCUGCGCCU-UCUCa -3'
miRNA:   3'- -GCGGUa-----GAUAu--UGGAUGUGGGuGGAG- -5'
28773 3' -51.4 NC_006146.1 + 146496 0.69 0.944577
Target:  5'- cCGCCGguugggCUGUuguGCCUGCGCCU-UCUCa -3'
miRNA:   3'- -GCGGUa-----GAUAu--UGGAUGUGGGuGGAG- -5'
28773 3' -51.4 NC_006146.1 + 143418 0.69 0.944577
Target:  5'- cCGCCGguugggCUGUuguGCCUGCGCCU-UCUCa -3'
miRNA:   3'- -GCGGUa-----GAUAu--UGGAUGUGGGuGGAG- -5'
28773 3' -51.4 NC_006146.1 + 143121 0.66 0.990977
Target:  5'- aGCCG---GUGACCUGagACCCACCc- -3'
miRNA:   3'- gCGGUagaUAUUGGAUg-UGGGUGGag -5'
28773 3' -51.4 NC_006146.1 + 138860 0.72 0.855857
Target:  5'- aCGCCcggGUC-AUGACCUGgGCCagCGCCUCg -3'
miRNA:   3'- -GCGG---UAGaUAUUGGAUgUGG--GUGGAG- -5'
28773 3' -51.4 NC_006146.1 + 138030 0.67 0.984977
Target:  5'- uGCCAggcaggGACCUcgcgcCGCCCGCUUCa -3'
miRNA:   3'- gCGGUagaua-UUGGAu----GUGGGUGGAG- -5'
28773 3' -51.4 NC_006146.1 + 137126 0.68 0.964502
Target:  5'- -cCCAUCg--GACC-ACGCCCACC-Cg -3'
miRNA:   3'- gcGGUAGauaUUGGaUGUGGGUGGaG- -5'
28773 3' -51.4 NC_006146.1 + 136863 0.66 0.989693
Target:  5'- gGCCGgcaUAggccccggGACC-ACGCCCGCCUg -3'
miRNA:   3'- gCGGUag-AUa-------UUGGaUGUGGGUGGAg -5'
28773 3' -51.4 NC_006146.1 + 134504 0.71 0.893037
Target:  5'- cCGCUAUCcAUAugCUGCuGCuCCAUCUCa -3'
miRNA:   3'- -GCGGUAGaUAUugGAUG-UG-GGUGGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.