Results 21 - 40 of 101 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28773 | 3' | -51.4 | NC_006146.1 | + | 131629 | 0.72 | 0.87066 |
Target: 5'- uGCCGUCUcgAguccgggGCCcACACCCGuuCCUCa -3' miRNA: 3'- gCGGUAGAuaU-------UGGaUGUGGGU--GGAG- -5' |
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28773 | 3' | -51.4 | NC_006146.1 | + | 130749 | 0.67 | 0.978772 |
Target: 5'- uCGCCGUCaacuccaggUAUGGCCaGC-CCC-CCUCc -3' miRNA: 3'- -GCGGUAG---------AUAUUGGaUGuGGGuGGAG- -5' |
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28773 | 3' | -51.4 | NC_006146.1 | + | 130600 | 0.7 | 0.934889 |
Target: 5'- gGCCuaCUuUGGCCUGCccggccucuuugGCCCGCCUCc -3' miRNA: 3'- gCGGuaGAuAUUGGAUG------------UGGGUGGAG- -5' |
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28773 | 3' | -51.4 | NC_006146.1 | + | 130456 | 0.71 | 0.91248 |
Target: 5'- gGCCAUU----GCC-GCACCCGCCUa -3' miRNA: 3'- gCGGUAGauauUGGaUGUGGGUGGAg -5' |
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28773 | 3' | -51.4 | NC_006146.1 | + | 128385 | 0.67 | 0.980143 |
Target: 5'- aCGCCAUCaaccUGACCggacaaaaguucgACACCCuCUUCg -3' miRNA: 3'- -GCGGUAGau--AUUGGa------------UGUGGGuGGAG- -5' |
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28773 | 3' | -51.4 | NC_006146.1 | + | 126944 | 0.66 | 0.992131 |
Target: 5'- cCGCCAUCagGUAGCaUACACUaucccgCGCCUUu -3' miRNA: 3'- -GCGGUAGa-UAUUGgAUGUGG------GUGGAG- -5' |
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28773 | 3' | -51.4 | NC_006146.1 | + | 126058 | 1.1 | 0.007657 |
Target: 5'- cCGCCAUCUAUAACCUACACCCACCUCc -3' miRNA: 3'- -GCGGUAGAUAUUGGAUGUGGGUGGAG- -5' |
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28773 | 3' | -51.4 | NC_006146.1 | + | 125807 | 0.69 | 0.95725 |
Target: 5'- aGCCGgagaAUGGCCgGCACCCucCCUCu -3' miRNA: 3'- gCGGUaga-UAUUGGaUGUGGGu-GGAG- -5' |
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28773 | 3' | -51.4 | NC_006146.1 | + | 125453 | 0.71 | 0.899765 |
Target: 5'- gGCacaAUCUGccUGACCUACAguUCCACUUCa -3' miRNA: 3'- gCGg--UAGAU--AUUGGAUGU--GGGUGGAG- -5' |
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28773 | 3' | -51.4 | NC_006146.1 | + | 124171 | 0.81 | 0.422534 |
Target: 5'- gGCCAgc-GUGGCCUcCGCCCGCCUCg -3' miRNA: 3'- gCGGUagaUAUUGGAuGUGGGUGGAG- -5' |
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28773 | 3' | -51.4 | NC_006146.1 | + | 122049 | 0.66 | 0.989693 |
Target: 5'- gGCCGaCg---GCUUcGCGCCCGCCUCc -3' miRNA: 3'- gCGGUaGauauUGGA-UGUGGGUGGAG- -5' |
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28773 | 3' | -51.4 | NC_006146.1 | + | 121500 | 0.7 | 0.916099 |
Target: 5'- cCGCCAagaaccccACCUACAUCCGCCUg -3' miRNA: 3'- -GCGGUagauau--UGGAUGUGGGUGGAg -5' |
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28773 | 3' | -51.4 | NC_006146.1 | + | 121229 | 0.74 | 0.766469 |
Target: 5'- cCGCCAUCggaaugcucaagUGUAagcaGCCggGCGCCCGCUUCg -3' miRNA: 3'- -GCGGUAG------------AUAU----UGGa-UGUGGGUGGAG- -5' |
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28773 | 3' | -51.4 | NC_006146.1 | + | 119671 | 0.74 | 0.756676 |
Target: 5'- gGCCAUCaccAACCU-CACCCGCCa- -3' miRNA: 3'- gCGGUAGauaUUGGAuGUGGGUGGag -5' |
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28773 | 3' | -51.4 | NC_006146.1 | + | 119041 | 0.72 | 0.855056 |
Target: 5'- aGCUggGUCUGUuuuacgcacuGGCCUGCaaccgcaGCCCACCUCc -3' miRNA: 3'- gCGG--UAGAUA----------UUGGAUG-------UGGGUGGAG- -5' |
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28773 | 3' | -51.4 | NC_006146.1 | + | 117909 | 0.66 | 0.993164 |
Target: 5'- gGCCAgaagaggGGCCUcgagACGCCCGCCcCg -3' miRNA: 3'- gCGGUagaua--UUGGA----UGUGGGUGGaG- -5' |
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28773 | 3' | -51.4 | NC_006146.1 | + | 113836 | 0.66 | 0.989693 |
Target: 5'- gGCCAUCcgcgucaGGCCcccuCCCGCCUCa -3' miRNA: 3'- gCGGUAGaua----UUGGauguGGGUGGAG- -5' |
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28773 | 3' | -51.4 | NC_006146.1 | + | 112461 | 0.72 | 0.871417 |
Target: 5'- uGCCAuacUCUGUGACCcccAgACCCACCcCg -3' miRNA: 3'- gCGGU---AGAUAUUGGa--UgUGGGUGGaG- -5' |
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28773 | 3' | -51.4 | NC_006146.1 | + | 111566 | 0.66 | 0.988272 |
Target: 5'- gGCuCAUCUAU-GCCgucaACACCgccaGCCUCu -3' miRNA: 3'- gCG-GUAGAUAuUGGa---UGUGGg---UGGAG- -5' |
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28773 | 3' | -51.4 | NC_006146.1 | + | 109412 | 0.69 | 0.960992 |
Target: 5'- gGCCGUCggucagGGCCcguUugGCCC-CCUCa -3' miRNA: 3'- gCGGUAGaua---UUGG---AugUGGGuGGAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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