miRNA display CGI


Results 21 - 40 of 101 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28773 3' -51.4 NC_006146.1 + 131629 0.72 0.87066
Target:  5'- uGCCGUCUcgAguccgggGCCcACACCCGuuCCUCa -3'
miRNA:   3'- gCGGUAGAuaU-------UGGaUGUGGGU--GGAG- -5'
28773 3' -51.4 NC_006146.1 + 130749 0.67 0.978772
Target:  5'- uCGCCGUCaacuccaggUAUGGCCaGC-CCC-CCUCc -3'
miRNA:   3'- -GCGGUAG---------AUAUUGGaUGuGGGuGGAG- -5'
28773 3' -51.4 NC_006146.1 + 130600 0.7 0.934889
Target:  5'- gGCCuaCUuUGGCCUGCccggccucuuugGCCCGCCUCc -3'
miRNA:   3'- gCGGuaGAuAUUGGAUG------------UGGGUGGAG- -5'
28773 3' -51.4 NC_006146.1 + 130456 0.71 0.91248
Target:  5'- gGCCAUU----GCC-GCACCCGCCUa -3'
miRNA:   3'- gCGGUAGauauUGGaUGUGGGUGGAg -5'
28773 3' -51.4 NC_006146.1 + 128385 0.67 0.980143
Target:  5'- aCGCCAUCaaccUGACCggacaaaaguucgACACCCuCUUCg -3'
miRNA:   3'- -GCGGUAGau--AUUGGa------------UGUGGGuGGAG- -5'
28773 3' -51.4 NC_006146.1 + 126944 0.66 0.992131
Target:  5'- cCGCCAUCagGUAGCaUACACUaucccgCGCCUUu -3'
miRNA:   3'- -GCGGUAGa-UAUUGgAUGUGG------GUGGAG- -5'
28773 3' -51.4 NC_006146.1 + 126058 1.1 0.007657
Target:  5'- cCGCCAUCUAUAACCUACACCCACCUCc -3'
miRNA:   3'- -GCGGUAGAUAUUGGAUGUGGGUGGAG- -5'
28773 3' -51.4 NC_006146.1 + 125807 0.69 0.95725
Target:  5'- aGCCGgagaAUGGCCgGCACCCucCCUCu -3'
miRNA:   3'- gCGGUaga-UAUUGGaUGUGGGu-GGAG- -5'
28773 3' -51.4 NC_006146.1 + 125453 0.71 0.899765
Target:  5'- gGCacaAUCUGccUGACCUACAguUCCACUUCa -3'
miRNA:   3'- gCGg--UAGAU--AUUGGAUGU--GGGUGGAG- -5'
28773 3' -51.4 NC_006146.1 + 124171 0.81 0.422534
Target:  5'- gGCCAgc-GUGGCCUcCGCCCGCCUCg -3'
miRNA:   3'- gCGGUagaUAUUGGAuGUGGGUGGAG- -5'
28773 3' -51.4 NC_006146.1 + 122049 0.66 0.989693
Target:  5'- gGCCGaCg---GCUUcGCGCCCGCCUCc -3'
miRNA:   3'- gCGGUaGauauUGGA-UGUGGGUGGAG- -5'
28773 3' -51.4 NC_006146.1 + 121500 0.7 0.916099
Target:  5'- cCGCCAagaaccccACCUACAUCCGCCUg -3'
miRNA:   3'- -GCGGUagauau--UGGAUGUGGGUGGAg -5'
28773 3' -51.4 NC_006146.1 + 121229 0.74 0.766469
Target:  5'- cCGCCAUCggaaugcucaagUGUAagcaGCCggGCGCCCGCUUCg -3'
miRNA:   3'- -GCGGUAG------------AUAU----UGGa-UGUGGGUGGAG- -5'
28773 3' -51.4 NC_006146.1 + 119671 0.74 0.756676
Target:  5'- gGCCAUCaccAACCU-CACCCGCCa- -3'
miRNA:   3'- gCGGUAGauaUUGGAuGUGGGUGGag -5'
28773 3' -51.4 NC_006146.1 + 119041 0.72 0.855056
Target:  5'- aGCUggGUCUGUuuuacgcacuGGCCUGCaaccgcaGCCCACCUCc -3'
miRNA:   3'- gCGG--UAGAUA----------UUGGAUG-------UGGGUGGAG- -5'
28773 3' -51.4 NC_006146.1 + 117909 0.66 0.993164
Target:  5'- gGCCAgaagaggGGCCUcgagACGCCCGCCcCg -3'
miRNA:   3'- gCGGUagaua--UUGGA----UGUGGGUGGaG- -5'
28773 3' -51.4 NC_006146.1 + 113836 0.66 0.989693
Target:  5'- gGCCAUCcgcgucaGGCCcccuCCCGCCUCa -3'
miRNA:   3'- gCGGUAGaua----UUGGauguGGGUGGAG- -5'
28773 3' -51.4 NC_006146.1 + 112461 0.72 0.871417
Target:  5'- uGCCAuacUCUGUGACCcccAgACCCACCcCg -3'
miRNA:   3'- gCGGU---AGAUAUUGGa--UgUGGGUGGaG- -5'
28773 3' -51.4 NC_006146.1 + 111566 0.66 0.988272
Target:  5'- gGCuCAUCUAU-GCCgucaACACCgccaGCCUCu -3'
miRNA:   3'- gCG-GUAGAUAuUGGa---UGUGGg---UGGAG- -5'
28773 3' -51.4 NC_006146.1 + 109412 0.69 0.960992
Target:  5'- gGCCGUCggucagGGCCcguUugGCCC-CCUCa -3'
miRNA:   3'- gCGGUAGaua---UUGG---AugUGGGuGGAG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.