miRNA display CGI


Results 1 - 20 of 101 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28773 3' -51.4 NC_006146.1 + 126058 1.1 0.007657
Target:  5'- cCGCCAUCUAUAACCUACACCCACCUCc -3'
miRNA:   3'- -GCGGUAGAUAUUGGAUGUGGGUGGAG- -5'
28773 3' -51.4 NC_006146.1 + 124171 0.81 0.422534
Target:  5'- gGCCAgc-GUGGCCUcCGCCCGCCUCg -3'
miRNA:   3'- gCGGUagaUAUUGGAuGUGGGUGGAG- -5'
28773 3' -51.4 NC_006146.1 + 95646 0.77 0.590847
Target:  5'- gGCCAUCcccGUGcACCccACGCCCGCCUCg -3'
miRNA:   3'- gCGGUAGa--UAU-UGGa-UGUGGGUGGAG- -5'
28773 3' -51.4 NC_006146.1 + 150584 0.75 0.726638
Target:  5'- gGCCAUCgu---CCaGCACCCGCCUg -3'
miRNA:   3'- gCGGUAGauauuGGaUGUGGGUGGAg -5'
28773 3' -51.4 NC_006146.1 + 35030 0.74 0.756676
Target:  5'- aCGCCcggGUC-AUGACCUGuCACUCGCCUUg -3'
miRNA:   3'- -GCGG---UAGaUAUUGGAU-GUGGGUGGAG- -5'
28773 3' -51.4 NC_006146.1 + 119671 0.74 0.756676
Target:  5'- gGCCAUCaccAACCU-CACCCGCCa- -3'
miRNA:   3'- gCGGUAGauaUUGGAuGUGGGUGGag -5'
28773 3' -51.4 NC_006146.1 + 166203 0.74 0.765495
Target:  5'- aGCCGUgCUGcaccucaaacaucUGAUCUGCcCCCGCCUCg -3'
miRNA:   3'- gCGGUA-GAU-------------AUUGGAUGuGGGUGGAG- -5'
28773 3' -51.4 NC_006146.1 + 121229 0.74 0.766469
Target:  5'- cCGCCAUCggaaugcucaagUGUAagcaGCCggGCGCCCGCUUCg -3'
miRNA:   3'- -GCGGUAG------------AUAU----UGGa-UGUGGGUGGAG- -5'
28773 3' -51.4 NC_006146.1 + 23126 0.74 0.776134
Target:  5'- cCGCCcaGUCUcu-GCCUccaggcaaggGCGCCCGCCUCc -3'
miRNA:   3'- -GCGG--UAGAuauUGGA----------UGUGGGUGGAG- -5'
28773 3' -51.4 NC_006146.1 + 26204 0.74 0.776134
Target:  5'- cCGCCcaGUCUcu-GCCUccaggcaaggGCGCCCGCCUCc -3'
miRNA:   3'- -GCGG--UAGAuauUGGA----------UGUGGGUGGAG- -5'
28773 3' -51.4 NC_006146.1 + 20048 0.74 0.776134
Target:  5'- cCGCCcaGUCUcu-GCCUccaggcaaggGCGCCCGCCUCc -3'
miRNA:   3'- -GCGG--UAGAuauUGGA----------UGUGGGUGGAG- -5'
28773 3' -51.4 NC_006146.1 + 29282 0.74 0.776134
Target:  5'- cCGCCcaGUCUcu-GCCUccaggcaaggGCGCCCGCCUCc -3'
miRNA:   3'- -GCGG--UAGAuauUGGA----------UGUGGGUGGAG- -5'
28773 3' -51.4 NC_006146.1 + 16970 0.74 0.776134
Target:  5'- cCGCCcaGUCUcu-GCCUccaggcaaggGCGCCCGCCUCc -3'
miRNA:   3'- -GCGG--UAGAuauUGGA----------UGUGGGUGGAG- -5'
28773 3' -51.4 NC_006146.1 + 13893 0.74 0.776134
Target:  5'- cCGCCcaGUCUcu-GCCUccaggcaaggGCGCCCGCCUCc -3'
miRNA:   3'- -GCGG--UAGAuauUGGA----------UGUGGGUGGAG- -5'
28773 3' -51.4 NC_006146.1 + 151317 0.73 0.804274
Target:  5'- gGCCAggagCUGUccucgcgccgGACCgagagguCGCCCACCUCg -3'
miRNA:   3'- gCGGUa---GAUA----------UUGGau-----GUGGGUGGAG- -5'
28773 3' -51.4 NC_006146.1 + 119041 0.72 0.855056
Target:  5'- aGCUggGUCUGUuuuacgcacuGGCCUGCaaccgcaGCCCACCUCc -3'
miRNA:   3'- gCGG--UAGAUA----------UUGGAUG-------UGGGUGGAG- -5'
28773 3' -51.4 NC_006146.1 + 43423 0.72 0.855857
Target:  5'- cCGCCGUCUccucguccaucaGUAGCCUGCgGgCCGCCa- -3'
miRNA:   3'- -GCGGUAGA------------UAUUGGAUG-UgGGUGGag -5'
28773 3' -51.4 NC_006146.1 + 138860 0.72 0.855857
Target:  5'- aCGCCcggGUC-AUGACCUGgGCCagCGCCUCg -3'
miRNA:   3'- -GCGG---UAGaUAUUGGAUgUGG--GUGGAG- -5'
28773 3' -51.4 NC_006146.1 + 103908 0.72 0.863748
Target:  5'- gGCCAUCU----CCUACACCCcauCCUa -3'
miRNA:   3'- gCGGUAGAuauuGGAUGUGGGu--GGAg -5'
28773 3' -51.4 NC_006146.1 + 131629 0.72 0.87066
Target:  5'- uGCCGUCUcgAguccgggGCCcACACCCGuuCCUCa -3'
miRNA:   3'- gCGGUAGAuaU-------UGGaUGUGGGU--GGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.