miRNA display CGI


Results 1 - 20 of 101 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28773 3' -51.4 NC_006146.1 + 95646 0.77 0.590847
Target:  5'- gGCCAUCcccGUGcACCccACGCCCGCCUCg -3'
miRNA:   3'- gCGGUAGa--UAU-UGGa-UGUGGGUGGAG- -5'
28773 3' -51.4 NC_006146.1 + 156858 0.71 0.906247
Target:  5'- aGCCGgcgCUugcGCCUGCcCCCGCCUg -3'
miRNA:   3'- gCGGUa--GAuauUGGAUGuGGGUGGAg -5'
28773 3' -51.4 NC_006146.1 + 130600 0.7 0.934889
Target:  5'- gGCCuaCUuUGGCCUGCccggccucuuugGCCCGCCUCc -3'
miRNA:   3'- gCGGuaGAuAUUGGAUG------------UGGGUGGAG- -5'
28773 3' -51.4 NC_006146.1 + 84541 0.66 0.993164
Target:  5'- gCGCCGUggcagGUggUUggGCAUCCACCUCc -3'
miRNA:   3'- -GCGGUAga---UAuuGGa-UGUGGGUGGAG- -5'
28773 3' -51.4 NC_006146.1 + 121229 0.74 0.766469
Target:  5'- cCGCCAUCggaaugcucaagUGUAagcaGCCggGCGCCCGCUUCg -3'
miRNA:   3'- -GCGGUAG------------AUAU----UGGa-UGUGGGUGGAG- -5'
28773 3' -51.4 NC_006146.1 + 13893 0.74 0.776134
Target:  5'- cCGCCcaGUCUcu-GCCUccaggcaaggGCGCCCGCCUCc -3'
miRNA:   3'- -GCGG--UAGAuauUGGA----------UGUGGGUGGAG- -5'
28773 3' -51.4 NC_006146.1 + 20048 0.74 0.776134
Target:  5'- cCGCCcaGUCUcu-GCCUccaggcaaggGCGCCCGCCUCc -3'
miRNA:   3'- -GCGG--UAGAuauUGGA----------UGUGGGUGGAG- -5'
28773 3' -51.4 NC_006146.1 + 23126 0.74 0.776134
Target:  5'- cCGCCcaGUCUcu-GCCUccaggcaaggGCGCCCGCCUCc -3'
miRNA:   3'- -GCGG--UAGAuauUGGA----------UGUGGGUGGAG- -5'
28773 3' -51.4 NC_006146.1 + 151317 0.73 0.804274
Target:  5'- gGCCAggagCUGUccucgcgccgGACCgagagguCGCCCACCUCg -3'
miRNA:   3'- gCGGUa---GAUA----------UUGGau-----GUGGGUGGAG- -5'
28773 3' -51.4 NC_006146.1 + 134504 0.71 0.893037
Target:  5'- cCGCUAUCcAUAugCUGCuGCuCCAUCUCa -3'
miRNA:   3'- -GCGGUAGaUAUugGAUG-UG-GGUGGAG- -5'
28773 3' -51.4 NC_006146.1 + 138860 0.72 0.855857
Target:  5'- aCGCCcggGUC-AUGACCUGgGCCagCGCCUCg -3'
miRNA:   3'- -GCGG---UAGaUAUUGGAUgUGG--GUGGAG- -5'
28773 3' -51.4 NC_006146.1 + 29282 0.74 0.776134
Target:  5'- cCGCCcaGUCUcu-GCCUccaggcaaggGCGCCCGCCUCc -3'
miRNA:   3'- -GCGG--UAGAuauUGGA----------UGUGGGUGGAG- -5'
28773 3' -51.4 NC_006146.1 + 150584 0.75 0.726638
Target:  5'- gGCCAUCgu---CCaGCACCCGCCUg -3'
miRNA:   3'- gCGGUAGauauuGGaUGUGGGUGGAg -5'
28773 3' -51.4 NC_006146.1 + 43423 0.72 0.855857
Target:  5'- cCGCCGUCUccucguccaucaGUAGCCUGCgGgCCGCCa- -3'
miRNA:   3'- -GCGGUAGA------------UAUUGGAUG-UgGGUGGag -5'
28773 3' -51.4 NC_006146.1 + 119671 0.74 0.756676
Target:  5'- gGCCAUCaccAACCU-CACCCGCCa- -3'
miRNA:   3'- gCGGUAGauaUUGGAuGUGGGUGGag -5'
28773 3' -51.4 NC_006146.1 + 26204 0.74 0.776134
Target:  5'- cCGCCcaGUCUcu-GCCUccaggcaaggGCGCCCGCCUCc -3'
miRNA:   3'- -GCGG--UAGAuauUGGA----------UGUGGGUGGAG- -5'
28773 3' -51.4 NC_006146.1 + 47784 0.71 0.886067
Target:  5'- gGCCGUCUGaaAGCCccgucuaGCGCCCACCg- -3'
miRNA:   3'- gCGGUAGAUa-UUGGa------UGUGGGUGGag -5'
28773 3' -51.4 NC_006146.1 + 130456 0.71 0.91248
Target:  5'- gGCCAUU----GCC-GCACCCGCCUa -3'
miRNA:   3'- gCGGUAGauauUGGaUGUGGGUGGAg -5'
28773 3' -51.4 NC_006146.1 + 35030 0.74 0.756676
Target:  5'- aCGCCcggGUC-AUGACCUGuCACUCGCCUUg -3'
miRNA:   3'- -GCGG---UAGaUAUUGGAU-GUGGGUGGAG- -5'
28773 3' -51.4 NC_006146.1 + 16970 0.74 0.776134
Target:  5'- cCGCCcaGUCUcu-GCCUccaggcaaggGCGCCCGCCUCc -3'
miRNA:   3'- -GCGG--UAGAuauUGGA----------UGUGGGUGGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.