Results 21 - 40 of 127 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
28774 | 3' | -65 | NC_006146.1 | + | 19370 | 0.72 | 0.258826 |
Target: 5'- cCUCGGguucaGCCGCUggCUGGCUCUGCCCc -3' miRNA: 3'- -GAGCC-----CGGCGAgaGACCGGGGUGGGc -5' |
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28774 | 3' | -65 | NC_006146.1 | + | 48709 | 0.72 | 0.264645 |
Target: 5'- gCUCcGuCCGCUCUCUGGCcuCCCGCUCGc -3' miRNA: 3'- -GAGcCcGGCGAGAGACCG--GGGUGGGC- -5' |
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28774 | 3' | -65 | NC_006146.1 | + | 366 | 0.71 | 0.270569 |
Target: 5'- -gCGGcgacaaucGCCGCgccccCUCaGGCCCCGCCCGc -3' miRNA: 3'- gaGCC--------CGGCGa----GAGaCCGGGGUGGGC- -5' |
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28774 | 3' | -65 | NC_006146.1 | + | 47633 | 0.71 | 0.276599 |
Target: 5'- --aGGGCCacgaGCcgUCUCUGGCCgCgGCCCGg -3' miRNA: 3'- gagCCCGG----CG--AGAGACCGG-GgUGGGC- -5' |
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28774 | 3' | -65 | NC_006146.1 | + | 100066 | 0.71 | 0.282737 |
Target: 5'- aCUCGGGcCCGCU---UGGCCCUugGCCCc -3' miRNA: 3'- -GAGCCC-GGCGAgagACCGGGG--UGGGc -5' |
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28774 | 3' | -65 | NC_006146.1 | + | 52996 | 0.71 | 0.288982 |
Target: 5'- uCUCGaGGCCcCUCuUCUGGCCCUggGCCUc -3' miRNA: 3'- -GAGC-CCGGcGAG-AGACCGGGG--UGGGc -5' |
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28774 | 3' | -65 | NC_006146.1 | + | 85264 | 0.71 | 0.304409 |
Target: 5'- -gUGGGCCaaccagccccugucuGcCUCUCUGGCCCUuugcCCCGg -3' miRNA: 3'- gaGCCCGG---------------C-GAGAGACCGGGGu---GGGC- -5' |
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28774 | 3' | -65 | NC_006146.1 | + | 68485 | 0.7 | 0.308364 |
Target: 5'- -gCGGGCUaugGCUCUUUGGCCgC-CCCa -3' miRNA: 3'- gaGCCCGG---CGAGAGACCGGgGuGGGc -5' |
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28774 | 3' | -65 | NC_006146.1 | + | 108577 | 0.7 | 0.321828 |
Target: 5'- gCUgGcGGCgGCgUCUCUGGCCUCGCUgGg -3' miRNA: 3'- -GAgC-CCGgCG-AGAGACCGGGGUGGgC- -5' |
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28774 | 3' | -65 | NC_006146.1 | + | 27866 | 0.7 | 0.321828 |
Target: 5'- cCUCGGGCC-C-CUCUGGacuccggcuuCCCCAUCCc -3' miRNA: 3'- -GAGCCCGGcGaGAGACC----------GGGGUGGGc -5' |
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28774 | 3' | -65 | NC_006146.1 | + | 24788 | 0.7 | 0.321828 |
Target: 5'- cCUCGGGCC-C-CUCUGGacuccggcuuCCCCAUCCc -3' miRNA: 3'- -GAGCCCGGcGaGAGACC----------GGGGUGGGc -5' |
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28774 | 3' | -65 | NC_006146.1 | + | 12475 | 0.7 | 0.321828 |
Target: 5'- cCUCGGGCC-C-CUCUGGacuccggcuuCCCCAUCCc -3' miRNA: 3'- -GAGCCCGGcGaGAGACC----------GGGGUGGGc -5' |
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28774 | 3' | -65 | NC_006146.1 | + | 15554 | 0.7 | 0.321828 |
Target: 5'- cCUCGGGCC-C-CUCUGGacuccggcuuCCCCAUCCc -3' miRNA: 3'- -GAGCCCGGcGaGAGACC----------GGGGUGGGc -5' |
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28774 | 3' | -65 | NC_006146.1 | + | 18632 | 0.7 | 0.321828 |
Target: 5'- cCUCGGGCC-C-CUCUGGacuccggcuuCCCCAUCCc -3' miRNA: 3'- -GAGCCCGGcGaGAGACC----------GGGGUGGGc -5' |
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28774 | 3' | -65 | NC_006146.1 | + | 21710 | 0.7 | 0.321828 |
Target: 5'- cCUCGGGCC-C-CUCUGGacuccggcuuCCCCAUCCc -3' miRNA: 3'- -GAGCCCGGcGaGAGACC----------GGGGUGGGc -5' |
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28774 | 3' | -65 | NC_006146.1 | + | 123071 | 0.7 | 0.328723 |
Target: 5'- cCUCGaGaGCCGCgCUCUGGCagCCCgaGCCCa -3' miRNA: 3'- -GAGC-C-CGGCGaGAGACCG--GGG--UGGGc -5' |
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28774 | 3' | -65 | NC_006146.1 | + | 168857 | 0.7 | 0.333614 |
Target: 5'- uCUCGGGCC-CUCUCUuggcgcugaGGCCuagggucaucguugCCGCCCc -3' miRNA: 3'- -GAGCCCGGcGAGAGA---------CCGG--------------GGUGGGc -5' |
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28774 | 3' | -65 | NC_006146.1 | + | 12930 | 0.7 | 0.335726 |
Target: 5'- cCUCuGGagGC-C-CUGGCCCCGCCCGg -3' miRNA: 3'- -GAGcCCggCGaGaGACCGGGGUGGGC- -5' |
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28774 | 3' | -65 | NC_006146.1 | + | 19085 | 0.7 | 0.335726 |
Target: 5'- cCUCuGGagGC-C-CUGGCCCCGCCCGg -3' miRNA: 3'- -GAGcCCggCGaGaGACCGGGGUGGGC- -5' |
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28774 | 3' | -65 | NC_006146.1 | + | 16007 | 0.7 | 0.335726 |
Target: 5'- cCUCuGGagGC-C-CUGGCCCCGCCCGg -3' miRNA: 3'- -GAGcCCggCGaGaGACCGGGGUGGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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