miRNA display CGI


Results 1 - 20 of 127 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28774 3' -65 NC_006146.1 + 124724 1.08 0.000619
Target:  5'- aCUCGGGCCGCUCUCUGGCCCCACCCGa -3'
miRNA:   3'- -GAGCCCGGCGAGAGACCGGGGUGGGC- -5'
28774 3' -65 NC_006146.1 + 44102 0.77 0.113678
Target:  5'- cCUCGGGCCGCgcgCUC-GGCgCCgaACCCGg -3'
miRNA:   3'- -GAGCCCGGCGa--GAGaCCGgGG--UGGGC- -5'
28774 3' -65 NC_006146.1 + 14562 0.75 0.155614
Target:  5'- -cUGGGCCGCUUUCggggcgUGaGCCCCAuCCCGg -3'
miRNA:   3'- gaGCCCGGCGAGAG------AC-CGGGGU-GGGC- -5'
28774 3' -65 NC_006146.1 + 41788 0.75 0.159364
Target:  5'- -cCGGGCgccCGCUCUCaGGCCCuCugCCGg -3'
miRNA:   3'- gaGCCCG---GCGAGAGaCCGGG-GugGGC- -5'
28774 3' -65 NC_006146.1 + 8297 0.74 0.17936
Target:  5'- aCUCccgGGGUCGCUCUCUgugcuguuagGGCCCCcgACCCu -3'
miRNA:   3'- -GAG---CCCGGCGAGAGA----------CCGGGG--UGGGc -5'
28774 3' -65 NC_006146.1 + 3161 0.73 0.211076
Target:  5'- -gCGGcgacaaucGCCGCgccccCUCaGGCCCCACCCGa -3'
miRNA:   3'- gaGCC--------CGGCGa----GAGaCCGGGGUGGGC- -5'
28774 3' -65 NC_006146.1 + 1297 0.73 0.211076
Target:  5'- -gCGGcgacaaucGCCGCgccccCUCaGGCCCCACCCGa -3'
miRNA:   3'- gaGCC--------CGGCGa----GAGaCCGGGGUGGGC- -5'
28774 3' -65 NC_006146.1 + 2229 0.73 0.211076
Target:  5'- -gCGGcgacaaucGCCGCgccccCUCaGGCCCCACCCGa -3'
miRNA:   3'- gaGCC--------CGGCGa----GAGaCCGGGGUGGGC- -5'
28774 3' -65 NC_006146.1 + 158164 0.73 0.219475
Target:  5'- cCUCGGGCCucugggcuggucucGCUUgCUGGCCCCAauggCCGc -3'
miRNA:   3'- -GAGCCCGG--------------CGAGaGACCGGGGUg---GGC- -5'
28774 3' -65 NC_006146.1 + 155085 0.73 0.219475
Target:  5'- cCUCGGGCCucugggcuggucucGCUUgCUGGCCCCAauggCCGc -3'
miRNA:   3'- -GAGCCCGG--------------CGAGaGACCGGGGUg---GGC- -5'
28774 3' -65 NC_006146.1 + 145851 0.73 0.219475
Target:  5'- cCUCGGGCCucugggcuggucucGCUUgCUGGCCCCAauggCCGc -3'
miRNA:   3'- -GAGCCCGG--------------CGAGaGACCGGGGUg---GGC- -5'
28774 3' -65 NC_006146.1 + 142773 0.73 0.219475
Target:  5'- cCUCGGGCCucugggcuggucucGCUUgCUGGCCCCAauggCCGc -3'
miRNA:   3'- -GAGCCCGG--------------CGAGaGACCGGGGUg---GGC- -5'
28774 3' -65 NC_006146.1 + 152007 0.73 0.219475
Target:  5'- cCUCGGGCCucugggcuggucucGCUUgCUGGCCCCAauggCCGc -3'
miRNA:   3'- -GAGCCCGG--------------CGAGaGACCGGGGUg---GGC- -5'
28774 3' -65 NC_006146.1 + 148929 0.73 0.219475
Target:  5'- cCUCGGGCCucugggcuggucucGCUUgCUGGCCCCAauggCCGc -3'
miRNA:   3'- -GAGCCCGG--------------CGAGaGACCGGGGUg---GGC- -5'
28774 3' -65 NC_006146.1 + 28604 0.72 0.258826
Target:  5'- cCUCGGguucaGCCGCUggCUGGCUCUGCCCc -3'
miRNA:   3'- -GAGCC-----CGGCGAgaGACCGGGGUGGGc -5'
28774 3' -65 NC_006146.1 + 25526 0.72 0.258826
Target:  5'- cCUCGGguucaGCCGCUggCUGGCUCUGCCCc -3'
miRNA:   3'- -GAGCC-----CGGCGAgaGACCGGGGUGGGc -5'
28774 3' -65 NC_006146.1 + 22448 0.72 0.258826
Target:  5'- cCUCGGguucaGCCGCUggCUGGCUCUGCCCc -3'
miRNA:   3'- -GAGCC-----CGGCGAgaGACCGGGGUGGGc -5'
28774 3' -65 NC_006146.1 + 19370 0.72 0.258826
Target:  5'- cCUCGGguucaGCCGCUggCUGGCUCUGCCCc -3'
miRNA:   3'- -GAGCC-----CGGCGAgaGACCGGGGUGGGc -5'
28774 3' -65 NC_006146.1 + 16292 0.72 0.258826
Target:  5'- cCUCGGguucaGCCGCUggCUGGCUCUGCCCc -3'
miRNA:   3'- -GAGCC-----CGGCGAgaGACCGGGGUGGGc -5'
28774 3' -65 NC_006146.1 + 13214 0.72 0.258826
Target:  5'- cCUCGGguucaGCCGCUggCUGGCUCUGCCCc -3'
miRNA:   3'- -GAGCC-----CGGCGAgaGACCGGGGUGGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.