miRNA display CGI


Results 1 - 20 of 127 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28774 3' -65 NC_006146.1 + 44102 0.77 0.113678
Target:  5'- cCUCGGGCCGCgcgCUC-GGCgCCgaACCCGg -3'
miRNA:   3'- -GAGCCCGGCGa--GAGaCCGgGG--UGGGC- -5'
28774 3' -65 NC_006146.1 + 24788 0.7 0.321828
Target:  5'- cCUCGGGCC-C-CUCUGGacuccggcuuCCCCAUCCc -3'
miRNA:   3'- -GAGCCCGGcGaGAGACC----------GGGGUGGGc -5'
28774 3' -65 NC_006146.1 + 12930 0.7 0.335726
Target:  5'- cCUCuGGagGC-C-CUGGCCCCGCCCGg -3'
miRNA:   3'- -GAGcCCggCGaGaGACCGGGGUGGGC- -5'
28774 3' -65 NC_006146.1 + 140744 0.66 0.57015
Target:  5'- --gGGuuGCCGCUCUCggaugcgUGGCcaugCCCACCCc -3'
miRNA:   3'- gagCC--CGGCGAGAG-------ACCG----GGGUGGGc -5'
28774 3' -65 NC_006146.1 + 19370 0.72 0.258826
Target:  5'- cCUCGGguucaGCCGCUggCUGGCUCUGCCCc -3'
miRNA:   3'- -GAGCC-----CGGCGAgaGACCGGGGUGGGc -5'
28774 3' -65 NC_006146.1 + 22448 0.72 0.258826
Target:  5'- cCUCGGguucaGCCGCUggCUGGCUCUGCCCc -3'
miRNA:   3'- -GAGCC-----CGGCGAgaGACCGGGGUGGGc -5'
28774 3' -65 NC_006146.1 + 28604 0.72 0.258826
Target:  5'- cCUCGGguucaGCCGCUggCUGGCUCUGCCCc -3'
miRNA:   3'- -GAGCC-----CGGCGAgaGACCGGGGUGGGc -5'
28774 3' -65 NC_006146.1 + 62014 0.72 0.258826
Target:  5'- aCUCGcuGGCCGCggcgCUC-GGCCUCugCCGc -3'
miRNA:   3'- -GAGC--CCGGCGa---GAGaCCGGGGugGGC- -5'
28774 3' -65 NC_006146.1 + 52996 0.71 0.288982
Target:  5'- uCUCGaGGCCcCUCuUCUGGCCCUggGCCUc -3'
miRNA:   3'- -GAGC-CCGGcGAG-AGACCGGGG--UGGGc -5'
28774 3' -65 NC_006146.1 + 21710 0.7 0.321828
Target:  5'- cCUCGGGCC-C-CUCUGGacuccggcuuCCCCAUCCc -3'
miRNA:   3'- -GAGCCCGGcGaGAGACC----------GGGGUGGGc -5'
28774 3' -65 NC_006146.1 + 12475 0.7 0.321828
Target:  5'- cCUCGGGCC-C-CUCUGGacuccggcuuCCCCAUCCc -3'
miRNA:   3'- -GAGCCCGGcGaGAGACC----------GGGGUGGGc -5'
28774 3' -65 NC_006146.1 + 47633 0.71 0.276599
Target:  5'- --aGGGCCacgaGCcgUCUCUGGCCgCgGCCCGg -3'
miRNA:   3'- gagCCCGG----CG--AGAGACCGG-GgUGGGC- -5'
28774 3' -65 NC_006146.1 + 8297 0.74 0.17936
Target:  5'- aCUCccgGGGUCGCUCUCUgugcuguuagGGCCCCcgACCCu -3'
miRNA:   3'- -GAG---CCCGGCGAGAGA----------CCGGGG--UGGGc -5'
28774 3' -65 NC_006146.1 + 15554 0.7 0.321828
Target:  5'- cCUCGGGCC-C-CUCUGGacuccggcuuCCCCAUCCc -3'
miRNA:   3'- -GAGCCCGGcGaGAGACC----------GGGGUGGGc -5'
28774 3' -65 NC_006146.1 + 13214 0.72 0.258826
Target:  5'- cCUCGGguucaGCCGCUggCUGGCUCUGCCCc -3'
miRNA:   3'- -GAGCC-----CGGCGAgaGACCGGGGUGGGc -5'
28774 3' -65 NC_006146.1 + 48709 0.72 0.264645
Target:  5'- gCUCcGuCCGCUCUCUGGCcuCCCGCUCGc -3'
miRNA:   3'- -GAGcCcGGCGAGAGACCG--GGGUGGGC- -5'
28774 3' -65 NC_006146.1 + 18632 0.7 0.321828
Target:  5'- cCUCGGGCC-C-CUCUGGacuccggcuuCCCCAUCCc -3'
miRNA:   3'- -GAGCCCGGcGaGAGACC----------GGGGUGGGc -5'
28774 3' -65 NC_006146.1 + 27866 0.7 0.321828
Target:  5'- cCUCGGGCC-C-CUCUGGacuccggcuuCCCCAUCCc -3'
miRNA:   3'- -GAGCCCGGcGaGAGACC----------GGGGUGGGc -5'
28774 3' -65 NC_006146.1 + 16292 0.72 0.258826
Target:  5'- cCUCGGguucaGCCGCUggCUGGCUCUGCCCc -3'
miRNA:   3'- -GAGCC-----CGGCGAgaGACCGGGGUGGGc -5'
28774 3' -65 NC_006146.1 + 25526 0.72 0.258826
Target:  5'- cCUCGGguucaGCCGCUggCUGGCUCUGCCCc -3'
miRNA:   3'- -GAGCC-----CGGCGAgaGACCGGGGUGGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.