miRNA display CGI


Results 1 - 20 of 127 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28774 3' -65 NC_006146.1 + 230 0.67 0.488321
Target:  5'- -cCGGGgCGCcC-CUGGCCUCcCCCGc -3'
miRNA:   3'- gaGCCCgGCGaGaGACCGGGGuGGGC- -5'
28774 3' -65 NC_006146.1 + 366 0.71 0.270569
Target:  5'- -gCGGcgacaaucGCCGCgccccCUCaGGCCCCGCCCGc -3'
miRNA:   3'- gaGCC--------CGGCGa----GAGaCCGGGGUGGGC- -5'
28774 3' -65 NC_006146.1 + 1161 0.69 0.380006
Target:  5'- -cCGGGCCGCcccggggcUCccccgcgccgaUCUGaGCgCCCACCCGu -3'
miRNA:   3'- gaGCCCGGCG--------AG-----------AGAC-CG-GGGUGGGC- -5'
28774 3' -65 NC_006146.1 + 1297 0.73 0.211076
Target:  5'- -gCGGcgacaaucGCCGCgccccCUCaGGCCCCACCCGa -3'
miRNA:   3'- gaGCC--------CGGCGa----GAGaCCGGGGUGGGC- -5'
28774 3' -65 NC_006146.1 + 2093 0.69 0.380006
Target:  5'- -cCGGGCCGCcccggggcUCccccgcgccgaUCUGaGCgCCCACCCGu -3'
miRNA:   3'- gaGCCCGGCG--------AG-----------AGAC-CG-GGGUGGGC- -5'
28774 3' -65 NC_006146.1 + 2229 0.73 0.211076
Target:  5'- -gCGGcgacaaucGCCGCgccccCUCaGGCCCCACCCGa -3'
miRNA:   3'- gaGCC--------CGGCGa----GAGaCCGGGGUGGGC- -5'
28774 3' -65 NC_006146.1 + 3025 0.69 0.380006
Target:  5'- -cCGGGCCGCcccggggcUCccccgcgccgaUCUGaGCgCCCACCCGu -3'
miRNA:   3'- gaGCCCGGCG--------AG-----------AGAC-CG-GGGUGGGC- -5'
28774 3' -65 NC_006146.1 + 3161 0.73 0.211076
Target:  5'- -gCGGcgacaaucGCCGCgccccCUCaGGCCCCACCCGa -3'
miRNA:   3'- gaGCC--------CGGCGa----GAGaCCGGGGUGGGC- -5'
28774 3' -65 NC_006146.1 + 3736 0.7 0.342838
Target:  5'- --gGGGCCGCg---UGGCCCUucaGCCCGg -3'
miRNA:   3'- gagCCCGGCGagagACCGGGG---UGGGC- -5'
28774 3' -65 NC_006146.1 + 4932 0.67 0.50628
Target:  5'- gUCGGGUgGCcgugCUCUGuGCCCCGgggaCCa -3'
miRNA:   3'- gAGCCCGgCGa---GAGAC-CGGGGUg---GGc -5'
28774 3' -65 NC_006146.1 + 5588 0.66 0.515364
Target:  5'- uCUCGGGgcuCUGCUCaccCgacGGCCgCCACCUGg -3'
miRNA:   3'- -GAGCCC---GGCGAGa--Ga--CCGG-GGUGGGC- -5'
28774 3' -65 NC_006146.1 + 8297 0.74 0.17936
Target:  5'- aCUCccgGGGUCGCUCUCUgugcuguuagGGCCCCcgACCCu -3'
miRNA:   3'- -GAG---CCCGGCGAGAGA----------CCGGGG--UGGGc -5'
28774 3' -65 NC_006146.1 + 12475 0.7 0.321828
Target:  5'- cCUCGGGCC-C-CUCUGGacuccggcuuCCCCAUCCc -3'
miRNA:   3'- -GAGCCCGGcGaGAGACC----------GGGGUGGGc -5'
28774 3' -65 NC_006146.1 + 12930 0.7 0.335726
Target:  5'- cCUCuGGagGC-C-CUGGCCCCGCCCGg -3'
miRNA:   3'- -GAGcCCggCGaGaGACCGGGGUGGGC- -5'
28774 3' -65 NC_006146.1 + 13214 0.72 0.258826
Target:  5'- cCUCGGguucaGCCGCUggCUGGCUCUGCCCc -3'
miRNA:   3'- -GAGCC-----CGGCGAgaGACCGGGGUGGGc -5'
28774 3' -65 NC_006146.1 + 14562 0.75 0.155614
Target:  5'- -cUGGGCCGCUUUCggggcgUGaGCCCCAuCCCGg -3'
miRNA:   3'- gaGCCCGGCGAGAG------AC-CGGGGU-GGGC- -5'
28774 3' -65 NC_006146.1 + 15554 0.7 0.321828
Target:  5'- cCUCGGGCC-C-CUCUGGacuccggcuuCCCCAUCCc -3'
miRNA:   3'- -GAGCCCGGcGaGAGACC----------GGGGUGGGc -5'
28774 3' -65 NC_006146.1 + 16007 0.7 0.335726
Target:  5'- cCUCuGGagGC-C-CUGGCCCCGCCCGg -3'
miRNA:   3'- -GAGcCCggCGaGaGACCGGGGUGGGC- -5'
28774 3' -65 NC_006146.1 + 16292 0.72 0.258826
Target:  5'- cCUCGGguucaGCCGCUggCUGGCUCUGCCCc -3'
miRNA:   3'- -GAGCC-----CGGCGAgaGACCGGGGUGGGc -5'
28774 3' -65 NC_006146.1 + 18632 0.7 0.321828
Target:  5'- cCUCGGGCC-C-CUCUGGacuccggcuuCCCCAUCCc -3'
miRNA:   3'- -GAGCCCGGcGaGAGACC----------GGGGUGGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.