Results 21 - 40 of 178 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28774 | 5' | -55.1 | NC_006146.1 | + | 108235 | 0.66 | 0.942121 |
Target: 5'- uGGCgGGUaCCAgAGUcCAGAGgACGGaCa -3' miRNA: 3'- -CCGaCCA-GGUgUUA-GUCUCgUGCCgG- -5' |
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28774 | 5' | -55.1 | NC_006146.1 | + | 100029 | 0.66 | 0.950796 |
Target: 5'- cGGCggGGUCCGCGGcuUCu---CGCGGUCg -3' miRNA: 3'- -CCGa-CCAGGUGUU--AGucucGUGCCGG- -5' |
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28774 | 5' | -55.1 | NC_006146.1 | + | 110882 | 0.66 | 0.950796 |
Target: 5'- gGGCUcGGg-CGCAggCGGGGaCGgGGCCg -3' miRNA: 3'- -CCGA-CCagGUGUuaGUCUC-GUgCCGG- -5' |
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28774 | 5' | -55.1 | NC_006146.1 | + | 52894 | 0.66 | 0.950796 |
Target: 5'- -aCUGGU-CACGGcCGuGAGCuACGGCCg -3' miRNA: 3'- ccGACCAgGUGUUaGU-CUCG-UGCCGG- -5' |
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28774 | 5' | -55.1 | NC_006146.1 | + | 109129 | 0.66 | 0.954789 |
Target: 5'- aGGCUGccGUCUugGgcAUCAGcAGCACcuGCCc -3' miRNA: 3'- -CCGAC--CAGGugU--UAGUC-UCGUGc-CGG- -5' |
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28774 | 5' | -55.1 | NC_006146.1 | + | 114361 | 0.66 | 0.954789 |
Target: 5'- gGGcCUGGcCCGCGugacgcGUCAGcuGCugAUGGCCg -3' miRNA: 3'- -CC-GACCaGGUGU------UAGUCu-CG--UGCCGG- -5' |
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28774 | 5' | -55.1 | NC_006146.1 | + | 41391 | 0.66 | 0.954789 |
Target: 5'- cGGCcGcUCCACGAacccgCAGAcGUagACGGCCg -3' miRNA: 3'- -CCGaCcAGGUGUUa----GUCU-CG--UGCCGG- -5' |
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28774 | 5' | -55.1 | NC_006146.1 | + | 106656 | 0.66 | 0.954789 |
Target: 5'- cGGCUGGUCaggGCcGUCcucuccccGGGCACGGg- -3' miRNA: 3'- -CCGACCAGg--UGuUAGu-------CUCGUGCCgg -5' |
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28774 | 5' | -55.1 | NC_006146.1 | + | 73027 | 0.66 | 0.936951 |
Target: 5'- aGGCUcaGGcccucguUCCACGGccCGGGGUcgGCGGCCc -3' miRNA: 3'- -CCGA--CC-------AGGUGUUa-GUCUCG--UGCCGG- -5' |
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28774 | 5' | -55.1 | NC_006146.1 | + | 147438 | 0.66 | 0.942121 |
Target: 5'- -cCUGG-CCACGGcCAGGGCcucguaGGCCg -3' miRNA: 3'- ccGACCaGGUGUUaGUCUCGug----CCGG- -5' |
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28774 | 5' | -55.1 | NC_006146.1 | + | 149631 | 0.66 | 0.954788 |
Target: 5'- gGGC--GUCCGCcagcaccaGGUC-GAGCACGcGCCg -3' miRNA: 3'- -CCGacCAGGUG--------UUAGuCUCGUGC-CGG- -5' |
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28774 | 5' | -55.1 | NC_006146.1 | + | 49606 | 0.66 | 0.932004 |
Target: 5'- uGGUgUGGaaCACAAUCuguccagagggcaGGuGCACGGCCc -3' miRNA: 3'- -CCG-ACCagGUGUUAG-------------UCuCGUGCCGG- -5' |
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28774 | 5' | -55.1 | NC_006146.1 | + | 124561 | 0.66 | 0.937433 |
Target: 5'- cGC-GGUCCuCAccuaccggcugGUCAGaAGCcCGGCCg -3' miRNA: 3'- cCGaCCAGGuGU-----------UAGUC-UCGuGCCGG- -5' |
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28774 | 5' | -55.1 | NC_006146.1 | + | 24298 | 0.66 | 0.936951 |
Target: 5'- gGGCUGGacgcuguuuccccUCCACc--CAGAGCGCGacguuGUCg -3' miRNA: 3'- -CCGACC-------------AGGUGuuaGUCUCGUGC-----CGG- -5' |
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28774 | 5' | -55.1 | NC_006146.1 | + | 70547 | 0.67 | 0.916317 |
Target: 5'- cGGCUGGcucgUCUugAGUCuGAGaauaaGGCCc -3' miRNA: 3'- -CCGACC----AGGugUUAGuCUCgug--CCGG- -5' |
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28774 | 5' | -55.1 | NC_006146.1 | + | 160337 | 0.67 | 0.921952 |
Target: 5'- aGGCUGG-CCACGGUCcauGuCACGGg- -3' miRNA: 3'- -CCGACCaGGUGUUAGucuC-GUGCCgg -5' |
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28774 | 5' | -55.1 | NC_006146.1 | + | 120548 | 0.67 | 0.916317 |
Target: 5'- cGCUGGaucUCCACGGgcuggaaaacCAGAGCcUGGUCa -3' miRNA: 3'- cCGACC---AGGUGUUa---------GUCUCGuGCCGG- -5' |
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28774 | 5' | -55.1 | NC_006146.1 | + | 117894 | 0.67 | 0.921952 |
Target: 5'- aGGCUGGUCaucgACccccgCGGc-CACGGCCg -3' miRNA: 3'- -CCGACCAGg---UGuua--GUCucGUGCCGG- -5' |
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28774 | 5' | -55.1 | NC_006146.1 | + | 2606 | 0.67 | 0.921952 |
Target: 5'- gGGagaGGgaagcaacaCACAGUCuGGAGCACGGCUu -3' miRNA: 3'- -CCga-CCag-------GUGUUAG-UCUCGUGCCGG- -5' |
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28774 | 5' | -55.1 | NC_006146.1 | + | 42725 | 0.67 | 0.921952 |
Target: 5'- gGGCUGGcagCCGCGGauccgggCGGuGCugccgcacaacGCGGCCu -3' miRNA: 3'- -CCGACCa--GGUGUUa------GUCuCG-----------UGCCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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