miRNA display CGI


Results 21 - 40 of 178 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28774 5' -55.1 NC_006146.1 + 95142 0.72 0.687824
Target:  5'- gGGCuUGGUCCGCcugaacUCggcggcgaugucggAGAGCACGGUCc -3'
miRNA:   3'- -CCG-ACCAGGUGuu----AG--------------UCUCGUGCCGG- -5'
28774 5' -55.1 NC_006146.1 + 41614 0.72 0.690844
Target:  5'- gGGCUGGUCCGCu----GGGCcCGGgCg -3'
miRNA:   3'- -CCGACCAGGUGuuaguCUCGuGCCgG- -5'
28774 5' -55.1 NC_006146.1 + 53982 0.72 0.694862
Target:  5'- gGGgUGGUCUGCGAucccccggcuuucccUCAGGGC-CGGCa -3'
miRNA:   3'- -CCgACCAGGUGUU---------------AGUCUCGuGCCGg -5'
28774 5' -55.1 NC_006146.1 + 112572 0.72 0.700875
Target:  5'- aGGCUGGUCuCACAGau-GAGCAUcacaGCCa -3'
miRNA:   3'- -CCGACCAG-GUGUUaguCUCGUGc---CGG- -5'
28774 5' -55.1 NC_006146.1 + 33607 0.71 0.720756
Target:  5'- gGGCgUGGUCCGCGGguUCGGuGCACcuggaaGGCa -3'
miRNA:   3'- -CCG-ACCAGGUGUU--AGUCuCGUG------CCGg -5'
28774 5' -55.1 NC_006146.1 + 40870 0.71 0.720757
Target:  5'- cGGCUcgcGGUCCGgAGaCGGAGCcGgGGCCu -3'
miRNA:   3'- -CCGA---CCAGGUgUUaGUCUCG-UgCCGG- -5'
28774 5' -55.1 NC_006146.1 + 133643 0.71 0.720757
Target:  5'- uGGCUGGgCUuuGAUguGGuGCAUGGCCg -3'
miRNA:   3'- -CCGACCaGGugUUAguCU-CGUGCCGG- -5'
28774 5' -55.1 NC_006146.1 + 14560 0.71 0.720757
Target:  5'- uGCUGGgCCGCuuUCGGGGCGUGaGCCc -3'
miRNA:   3'- cCGACCaGGUGuuAGUCUCGUGC-CGG- -5'
28774 5' -55.1 NC_006146.1 + 128827 0.71 0.730589
Target:  5'- cGGCgcGGUCCAgGAgCAGguaAGCcCGGCCa -3'
miRNA:   3'- -CCGa-CCAGGUgUUaGUC---UCGuGCCGG- -5'
28774 5' -55.1 NC_006146.1 + 66280 0.71 0.740336
Target:  5'- cGCgGGUCCuccUGAUCAGAuaGuCGCGGCCa -3'
miRNA:   3'- cCGaCCAGGu--GUUAGUCU--C-GUGCCGG- -5'
28774 5' -55.1 NC_006146.1 + 169053 0.71 0.74999
Target:  5'- cGGCgcgcgcccggGGUCC-CGGggggCGGcGCGCGGCCu -3'
miRNA:   3'- -CCGa---------CCAGGuGUUa---GUCuCGUGCCGG- -5'
28774 5' -55.1 NC_006146.1 + 168121 0.71 0.74999
Target:  5'- cGGCgcgcgcccggGGUCC-CGGggggCGGcGCGCGGCCu -3'
miRNA:   3'- -CCGa---------CCAGGuGUUa---GUCuCGUGCCGG- -5'
28774 5' -55.1 NC_006146.1 + 167189 0.71 0.74999
Target:  5'- cGGCgcgcgcccggGGUCC-CGGggggCGGcGCGCGGCCu -3'
miRNA:   3'- -CCGa---------CCAGGuGUUa---GUCuCGUGCCGG- -5'
28774 5' -55.1 NC_006146.1 + 41160 0.71 0.74999
Target:  5'- aGGaCUGGU-CGgGGUCGGAG-GCGGCCu -3'
miRNA:   3'- -CC-GACCAgGUgUUAGUCUCgUGCCGG- -5'
28774 5' -55.1 NC_006146.1 + 169985 0.71 0.74999
Target:  5'- cGGCgcgcgcccggGGUCC-CGGggggCGGcGCGCGGCCu -3'
miRNA:   3'- -CCGa---------CCAGGuGUUa---GUCuCGUGCCGG- -5'
28774 5' -55.1 NC_006146.1 + 123256 0.71 0.749991
Target:  5'- cGCUGGgccgggCCGCGGcCAGAG-ACGGCUc -3'
miRNA:   3'- cCGACCa-----GGUGUUaGUCUCgUGCCGG- -5'
28774 5' -55.1 NC_006146.1 + 59731 0.71 0.759542
Target:  5'- aGGCcgGGUCCACGuacacgUAGAGgGaggaGGCCa -3'
miRNA:   3'- -CCGa-CCAGGUGUua----GUCUCgUg---CCGG- -5'
28774 5' -55.1 NC_006146.1 + 58008 0.71 0.759542
Target:  5'- aGGCccgGGUCUcggccuuCGcgCAGAGCcCGGCCu -3'
miRNA:   3'- -CCGa--CCAGGu------GUuaGUCUCGuGCCGG- -5'
28774 5' -55.1 NC_006146.1 + 59917 0.7 0.768981
Target:  5'- uGCUGGUgCGCGGcUAcGAGCugGGUCu -3'
miRNA:   3'- cCGACCAgGUGUUaGU-CUCGugCCGG- -5'
28774 5' -55.1 NC_006146.1 + 112702 0.7 0.768982
Target:  5'- gGGuCUGGcCCGCAG-CAGGGCGucccugaGGCCc -3'
miRNA:   3'- -CC-GACCaGGUGUUaGUCUCGUg------CCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.