miRNA display CGI


Results 21 - 40 of 178 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28774 5' -55.1 NC_006146.1 + 33607 0.71 0.720756
Target:  5'- gGGCgUGGUCCGCGGguUCGGuGCACcuggaaGGCa -3'
miRNA:   3'- -CCG-ACCAGGUGUU--AGUCuCGUG------CCGg -5'
28774 5' -55.1 NC_006146.1 + 33990 0.68 0.889424
Target:  5'- cGCUGGUCCggugcaccuggaagGCAggggggggGUCGGGGCagGCGGgCg -3'
miRNA:   3'- cCGACCAGG--------------UGU--------UAGUCUCG--UGCCgG- -5'
28774 5' -55.1 NC_006146.1 + 35225 0.74 0.573095
Target:  5'- gGGCUcugggagauauccuaGGUUUggACGgaaauaugaGUCAGAGCACGGCCg -3'
miRNA:   3'- -CCGA---------------CCAGG--UGU---------UAGUCUCGUGCCGG- -5'
28774 5' -55.1 NC_006146.1 + 39764 0.69 0.839412
Target:  5'- aGGCUGGggCUugGAgUCAGGcUugGGCCc -3'
miRNA:   3'- -CCGACCa-GGugUU-AGUCUcGugCCGG- -5'
28774 5' -55.1 NC_006146.1 + 40149 0.69 0.855307
Target:  5'- gGGCUGG-CCAUAccUGGAGUugACGGCg -3'
miRNA:   3'- -CCGACCaGGUGUuaGUCUCG--UGCCGg -5'
28774 5' -55.1 NC_006146.1 + 40538 0.67 0.916317
Target:  5'- aGGUUGGUCUGCAG-CAGGGUcaugaaggugguGCGGg- -3'
miRNA:   3'- -CCGACCAGGUGUUaGUCUCG------------UGCCgg -5'
28774 5' -55.1 NC_006146.1 + 40870 0.71 0.720757
Target:  5'- cGGCUcgcGGUCCGgAGaCGGAGCcGgGGCCu -3'
miRNA:   3'- -CCGA---CCAGGUgUUaGUCUCG-UgCCGG- -5'
28774 5' -55.1 NC_006146.1 + 41160 0.71 0.74999
Target:  5'- aGGaCUGGU-CGgGGUCGGAG-GCGGCCu -3'
miRNA:   3'- -CC-GACCAgGUgUUAGUCUCgUGCCGG- -5'
28774 5' -55.1 NC_006146.1 + 41391 0.66 0.954789
Target:  5'- cGGCcGcUCCACGAacccgCAGAcGUagACGGCCg -3'
miRNA:   3'- -CCGaCcAGGUGUUa----GUCU-CG--UGCCGG- -5'
28774 5' -55.1 NC_006146.1 + 41614 0.72 0.690844
Target:  5'- gGGCUGGUCCGCu----GGGCcCGGgCg -3'
miRNA:   3'- -CCGACCAGGUGuuaguCUCGuGCCgG- -5'
28774 5' -55.1 NC_006146.1 + 42725 0.67 0.921952
Target:  5'- gGGCUGGcagCCGCGGauccgggCGGuGCugccgcacaacGCGGCCu -3'
miRNA:   3'- -CCGACCa--GGUGUUa------GUCuCG-----------UGCCGG- -5'
28774 5' -55.1 NC_006146.1 + 43676 0.66 0.942121
Target:  5'- aGCUGGgUCACGaagcgaGUCAGGaCGCGGCg -3'
miRNA:   3'- cCGACCaGGUGU------UAGUCUcGUGCCGg -5'
28774 5' -55.1 NC_006146.1 + 45511 0.69 0.855307
Target:  5'- uGGCcaagacGG-CCACGGUgGGGGcCugGGCCu -3'
miRNA:   3'- -CCGa-----CCaGGUGUUAgUCUC-GugCCGG- -5'
28774 5' -55.1 NC_006146.1 + 46617 0.66 0.954788
Target:  5'- cGGCcaGGUCUuCcAUCAGGGCcuugGgGGCCg -3'
miRNA:   3'- -CCGa-CCAGGuGuUAGUCUCG----UgCCGG- -5'
28774 5' -55.1 NC_006146.1 + 47380 0.68 0.8704
Target:  5'- gGGCaugaGGUCCuACgGGUUGGAGCGucUGGCCg -3'
miRNA:   3'- -CCGa---CCAGG-UG-UUAGUCUCGU--GCCGG- -5'
28774 5' -55.1 NC_006146.1 + 47750 0.76 0.471687
Target:  5'- gGGCUGGcCCugGGgaCGGAGaGCGGCCu -3'
miRNA:   3'- -CCGACCaGGugUUa-GUCUCgUGCCGG- -5'
28774 5' -55.1 NC_006146.1 + 47825 0.69 0.831181
Target:  5'- gGGCUcGGgCUGC---CAGAGCGCGGCUc -3'
miRNA:   3'- -CCGA-CCaGGUGuuaGUCUCGUGCCGG- -5'
28774 5' -55.1 NC_006146.1 + 48069 0.67 0.906811
Target:  5'- aGCgugcGGUCCACGuacucgcucacggCGGccgacAGCGCGGCCu -3'
miRNA:   3'- cCGa---CCAGGUGUua-----------GUC-----UCGUGCCGG- -5'
28774 5' -55.1 NC_006146.1 + 49011 0.77 0.435106
Target:  5'- cGGCUaGGagCCGCAGggcguucucCGGGGCGCGGCCc -3'
miRNA:   3'- -CCGA-CCa-GGUGUUa--------GUCUCGUGCCGG- -5'
28774 5' -55.1 NC_006146.1 + 49606 0.66 0.932004
Target:  5'- uGGUgUGGaaCACAAUCuguccagagggcaGGuGCACGGCCc -3'
miRNA:   3'- -CCG-ACCagGUGUUAG-------------UCuCGUGCCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.