miRNA display CGI


Results 21 - 40 of 286 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28775 3' -55.2 NC_006146.1 + 136383 0.74 0.543014
Target:  5'- --cUGGAgcucgGGGCCgggGGCCGGguGCCCCu -3'
miRNA:   3'- acuACCU-----UCUGGa--CCGGCUguUGGGG- -5'
28775 3' -55.2 NC_006146.1 + 136940 0.74 0.543014
Target:  5'- --cUGGAgcucgGGGCCgggGGCCGGguGCCCCu -3'
miRNA:   3'- acuACCU-----UCUGGa--CCGGCUguUGGGG- -5'
28775 3' -55.2 NC_006146.1 + 137405 0.74 0.543014
Target:  5'- --cUGGAgcucgGGGCCgggGGCCGGguGCCCCu -3'
miRNA:   3'- acuACCU-----UCUGGa--CCGGCUguUGGGG- -5'
28775 3' -55.2 NC_006146.1 + 137498 0.74 0.543014
Target:  5'- --cUGGAgcucgGGGCCgggGGCCGGguGCCCCu -3'
miRNA:   3'- acuACCU-----UCUGGa--CCGGCUguUGGGG- -5'
28775 3' -55.2 NC_006146.1 + 135918 0.74 0.543014
Target:  5'- --cUGGAgcucgGGGCCgggGGCCGGguGCCCCu -3'
miRNA:   3'- acuACCU-----UCUGGa--CCGGCUguUGGGG- -5'
28775 3' -55.2 NC_006146.1 + 135547 0.74 0.543014
Target:  5'- --cUGGAgcucgGGGCCgggGGCCGGguGCCCCu -3'
miRNA:   3'- acuACCU-----UCUGGa--CCGGCUguUGGGG- -5'
28775 3' -55.2 NC_006146.1 + 135454 0.74 0.543014
Target:  5'- --cUGGAgcucgGGGCCgggGGCCGGguGCCCCu -3'
miRNA:   3'- acuACCU-----UCUGGa--CCGGCUguUGGGG- -5'
28775 3' -55.2 NC_006146.1 + 137033 0.74 0.543014
Target:  5'- --cUGGAgcucgGGGCCgggGGCCGGguGCCCCu -3'
miRNA:   3'- acuACCU-----UCUGGa--CCGGCUguUGGGG- -5'
28775 3' -55.2 NC_006146.1 + 137126 0.74 0.543014
Target:  5'- --cUGGAgcucgGGGCCgggGGCCGGguGCCCCu -3'
miRNA:   3'- acuACCU-----UCUGGa--CCGGCUguUGGGG- -5'
28775 3' -55.2 NC_006146.1 + 137219 0.74 0.543014
Target:  5'- --cUGGAgcucgGGGCCgggGGCCGGguGCCCCu -3'
miRNA:   3'- acuACCU-----UCUGGa--CCGGCUguUGGGG- -5'
28775 3' -55.2 NC_006146.1 + 137312 0.74 0.543014
Target:  5'- --cUGGAgcucgGGGCCgggGGCCGGguGCCCCu -3'
miRNA:   3'- acuACCU-----UCUGGa--CCGGCUguUGGGG- -5'
28775 3' -55.2 NC_006146.1 + 135175 0.74 0.543014
Target:  5'- --cUGGAgcucgGGGCCgggGGCCGGguGCCCCu -3'
miRNA:   3'- acuACCU-----UCUGGa--CCGGCUguUGGGG- -5'
28775 3' -55.2 NC_006146.1 + 135268 0.74 0.543014
Target:  5'- --cUGGAgcucgGGGCCgggGGCCGGguGCCCCu -3'
miRNA:   3'- acuACCU-----UCUGGa--CCGGCUguUGGGG- -5'
28775 3' -55.2 NC_006146.1 + 135361 0.74 0.543014
Target:  5'- --cUGGAgcucgGGGCCgggGGCCGGguGCCCCu -3'
miRNA:   3'- acuACCU-----UCUGGa--CCGGCUguUGGGG- -5'
28775 3' -55.2 NC_006146.1 + 135640 0.74 0.543014
Target:  5'- --cUGGAgcucgGGGCCgggGGCCGGguGCCCCu -3'
miRNA:   3'- acuACCU-----UCUGGa--CCGGCUguUGGGG- -5'
28775 3' -55.2 NC_006146.1 + 135732 0.74 0.543014
Target:  5'- --cUGGAgcucgGGGCCgggGGCCGGguGCCCCu -3'
miRNA:   3'- acuACCU-----UCUGGa--CCGGCUguUGGGG- -5'
28775 3' -55.2 NC_006146.1 + 51720 0.74 0.552946
Target:  5'- gUGGUGGAGGACaugGGgaGGCGgcGCCCCg -3'
miRNA:   3'- -ACUACCUUCUGga-CCggCUGU--UGGGG- -5'
28775 3' -55.2 NC_006146.1 + 116146 0.74 0.552946
Target:  5'- -cGUGGAagAGACaCUGGgUGACGGCCCUg -3'
miRNA:   3'- acUACCU--UCUG-GACCgGCUGUUGGGG- -5'
28775 3' -55.2 NC_006146.1 + 168613 0.74 0.562931
Target:  5'- gGAaGGAGGGCCUGGCucCGGUGACCUCa -3'
miRNA:   3'- aCUaCCUUCUGGACCG--GCUGUUGGGG- -5'
28775 3' -55.2 NC_006146.1 + 59259 0.74 0.583039
Target:  5'- gGGUGuucAGGGCCUGGCCGACGuCUUCg -3'
miRNA:   3'- aCUACc--UUCUGGACCGGCUGUuGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.