miRNA display CGI


Results 1 - 20 of 286 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28775 3' -55.2 NC_006146.1 + 124292 1.13 0.002342
Target:  5'- cUGAUGGAAGACCUGGCCGACAACCCCa -3'
miRNA:   3'- -ACUACCUUCUGGACCGGCUGUUGGGG- -5'
28775 3' -55.2 NC_006146.1 + 31698 0.79 0.324349
Target:  5'- gGGUGGggGACCgcGGCUGcCAccGCCCCu -3'
miRNA:   3'- aCUACCuuCUGGa-CCGGCuGU--UGGGG- -5'
28775 3' -55.2 NC_006146.1 + 87255 0.78 0.346894
Target:  5'- aGGUGGAGG-UCUGGCCcGCAgaGCCCCc -3'
miRNA:   3'- aCUACCUUCuGGACCGGcUGU--UGGGG- -5'
28775 3' -55.2 NC_006146.1 + 121331 0.77 0.407158
Target:  5'- cUGGaGGAcaucgaggccaugcuGGGCCUGGCCGGCGuggccuccGCCCCc -3'
miRNA:   3'- -ACUaCCU---------------UCUGGACCGGCUGU--------UGGGG- -5'
28775 3' -55.2 NC_006146.1 + 47690 0.77 0.424536
Target:  5'- gGAUGGAGGACUUGGgCGuggaagagguggggaGCAGCgCCCg -3'
miRNA:   3'- aCUACCUUCUGGACCgGC---------------UGUUG-GGG- -5'
28775 3' -55.2 NC_006146.1 + 123359 0.77 0.429835
Target:  5'- cGAgGGAGcucuGGCgCUGGCCGGgGGCCCCg -3'
miRNA:   3'- aCUaCCUU----CUG-GACCGGCUgUUGGGG- -5'
28775 3' -55.2 NC_006146.1 + 42682 0.76 0.466123
Target:  5'- cGGUGGGcuGCCUgaGGCUGGCAgaGCCCCc -3'
miRNA:   3'- aCUACCUucUGGA--CCGGCUGU--UGGGG- -5'
28775 3' -55.2 NC_006146.1 + 158258 0.75 0.503934
Target:  5'- uUGAgccacucgGGggGACuCUGGCC--CAGCCCCg -3'
miRNA:   3'- -ACUa-------CCuuCUG-GACCGGcuGUUGGGG- -5'
28775 3' -55.2 NC_006146.1 + 97846 0.75 0.503934
Target:  5'- cGAccUGGAGGAgggGGCCGcCGACCCCg -3'
miRNA:   3'- aCU--ACCUUCUggaCCGGCuGUUGGGG- -5'
28775 3' -55.2 NC_006146.1 + 137591 0.75 0.503934
Target:  5'- --cUGGAgcucGGGCCgggGGCCGGguGCCCCu -3'
miRNA:   3'- acuACCU----UCUGGa--CCGGCUguUGGGG- -5'
28775 3' -55.2 NC_006146.1 + 135547 0.74 0.543014
Target:  5'- --cUGGAgcucgGGGCCgggGGCCGGguGCCCCu -3'
miRNA:   3'- acuACCU-----UCUGGa--CCGGCUguUGGGG- -5'
28775 3' -55.2 NC_006146.1 + 135454 0.74 0.543014
Target:  5'- --cUGGAgcucgGGGCCgggGGCCGGguGCCCCu -3'
miRNA:   3'- acuACCU-----UCUGGa--CCGGCUguUGGGG- -5'
28775 3' -55.2 NC_006146.1 + 135732 0.74 0.543014
Target:  5'- --cUGGAgcucgGGGCCgggGGCCGGguGCCCCu -3'
miRNA:   3'- acuACCU-----UCUGGa--CCGGCUguUGGGG- -5'
28775 3' -55.2 NC_006146.1 + 135918 0.74 0.543014
Target:  5'- --cUGGAgcucgGGGCCgggGGCCGGguGCCCCu -3'
miRNA:   3'- acuACCU-----UCUGGa--CCGGCUguUGGGG- -5'
28775 3' -55.2 NC_006146.1 + 135268 0.74 0.543014
Target:  5'- --cUGGAgcucgGGGCCgggGGCCGGguGCCCCu -3'
miRNA:   3'- acuACCU-----UCUGGa--CCGGCUguUGGGG- -5'
28775 3' -55.2 NC_006146.1 + 135640 0.74 0.543014
Target:  5'- --cUGGAgcucgGGGCCgggGGCCGGguGCCCCu -3'
miRNA:   3'- acuACCU-----UCUGGa--CCGGCUguUGGGG- -5'
28775 3' -55.2 NC_006146.1 + 135825 0.74 0.543014
Target:  5'- --cUGGAgcucgGGGCCgggGGCCGGguGCCCCu -3'
miRNA:   3'- acuACCU-----UCUGGa--CCGGCUguUGGGG- -5'
28775 3' -55.2 NC_006146.1 + 135175 0.74 0.543014
Target:  5'- --cUGGAgcucgGGGCCgggGGCCGGguGCCCCu -3'
miRNA:   3'- acuACCU-----UCUGGa--CCGGCUguUGGGG- -5'
28775 3' -55.2 NC_006146.1 + 136011 0.74 0.543014
Target:  5'- --cUGGAgcucgGGGCCgggGGCCGGguGCCCCu -3'
miRNA:   3'- acuACCU-----UCUGGa--CCGGCUguUGGGG- -5'
28775 3' -55.2 NC_006146.1 + 135361 0.74 0.543014
Target:  5'- --cUGGAgcucgGGGCCgggGGCCGGguGCCCCu -3'
miRNA:   3'- acuACCU-----UCUGGa--CCGGCUguUGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.