Results 1 - 20 of 286 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28775 | 3' | -55.2 | NC_006146.1 | + | 47744 | 0.65 | 0.95448 |
Target: 5'- --uUGGAGGGgCUGGCCcuggggacggagaGCGGCCUCu -3' miRNA: 3'- acuACCUUCUgGACCGGc------------UGUUGGGG- -5' |
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28775 | 3' | -55.2 | NC_006146.1 | + | 76094 | 0.66 | 0.943591 |
Target: 5'- cUGGUGGGcaacccccGGGCCUcGGCCuacgugGACGugGCCCg -3' miRNA: 3'- -ACUACCU--------UCUGGA-CCGG------CUGU--UGGGg -5' |
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28775 | 3' | -55.2 | NC_006146.1 | + | 21621 | 0.66 | 0.940856 |
Target: 5'- aGAUGGccgAGGACCcGGCCuacgcggagcggcacGGCAuUCCCg -3' miRNA: 3'- aCUACC---UUCUGGaCCGG---------------CUGUuGGGG- -5' |
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28775 | 3' | -55.2 | NC_006146.1 | + | 130132 | 0.66 | 0.938986 |
Target: 5'- aUGAUGGAGuuCUUGGgcagguccacguCCGuggcCAGCCCCa -3' miRNA: 3'- -ACUACCUUcuGGACC------------GGCu---GUUGGGG- -5' |
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28775 | 3' | -55.2 | NC_006146.1 | + | 125260 | 0.66 | 0.938986 |
Target: 5'- --cUGGAuuuuaugaaGGACCUGGaaGGCuACUCCg -3' miRNA: 3'- acuACCU---------UCUGGACCggCUGuUGGGG- -5' |
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28775 | 3' | -55.2 | NC_006146.1 | + | 31619 | 0.66 | 0.938986 |
Target: 5'- gGAUGGGcucaAGGCCgGGCCcucuGCcACCUCa -3' miRNA: 3'- aCUACCU----UCUGGaCCGGc---UGuUGGGG- -5' |
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28775 | 3' | -55.2 | NC_006146.1 | + | 3318 | 0.66 | 0.938986 |
Target: 5'- ---gGGGAGGCCcGGCCuccacacACGGCCUCu -3' miRNA: 3'- acuaCCUUCUGGaCCGGc------UGUUGGGG- -5' |
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28775 | 3' | -55.2 | NC_006146.1 | + | 2386 | 0.66 | 0.938986 |
Target: 5'- ---gGGGAGGCCcGGCCuccacacACGGCCUCu -3' miRNA: 3'- acuaCCUUCUGGaCCGGc------UGUUGGGG- -5' |
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28775 | 3' | -55.2 | NC_006146.1 | + | 1454 | 0.66 | 0.938986 |
Target: 5'- ---gGGGAGGCCcGGCCuccacacACGGCCUCu -3' miRNA: 3'- acuaCCUUCUGGaCCGGc------UGUUGGGG- -5' |
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28775 | 3' | -55.2 | NC_006146.1 | + | 122025 | 0.66 | 0.943591 |
Target: 5'- aGA-GGcgcAGGCCUggcgccuggaGGCCGACGGCUUCg -3' miRNA: 3'- aCUaCCu--UCUGGA----------CCGGCUGUUGGGG- -5' |
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28775 | 3' | -55.2 | NC_006146.1 | + | 42836 | 0.66 | 0.943591 |
Target: 5'- ---aGGAucaGGGCCUcgagGGCCGcCAGgCCCa -3' miRNA: 3'- acuaCCU---UCUGGA----CCGGCuGUUgGGG- -5' |
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28775 | 3' | -55.2 | NC_006146.1 | + | 132615 | 0.66 | 0.943591 |
Target: 5'- aGAUGGAAag---GGCCGGCAgugugGCCCg -3' miRNA: 3'- aCUACCUUcuggaCCGGCUGU-----UGGGg -5' |
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28775 | 3' | -55.2 | NC_006146.1 | + | 170085 | 0.66 | 0.953697 |
Target: 5'- gGAUGGccggcgggaGGGGCCggcgccgcagggggGGCCGGCGGggcgUCCCg -3' miRNA: 3'- aCUACC---------UUCUGGa-------------CCGGCUGUU----GGGG- -5' |
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28775 | 3' | -55.2 | NC_006146.1 | + | 10667 | 0.66 | 0.952105 |
Target: 5'- gGAcgGGGAGGCCcgGGgCGAU-ACCCg -3' miRNA: 3'- aCUa-CCUUCUGGa-CCgGCUGuUGGGg -5' |
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28775 | 3' | -55.2 | NC_006146.1 | + | 25708 | 0.66 | 0.947963 |
Target: 5'- -aGUGGAAG-CCgGGCC---AGCCCCu -3' miRNA: 3'- acUACCUUCuGGaCCGGcugUUGGGG- -5' |
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28775 | 3' | -55.2 | NC_006146.1 | + | 117973 | 0.66 | 0.947963 |
Target: 5'- aGgcGGcGGACgaGGCCaGCGcCCCCg -3' miRNA: 3'- aCuaCCuUCUGgaCCGGcUGUuGGGG- -5' |
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28775 | 3' | -55.2 | NC_006146.1 | + | 103108 | 0.66 | 0.947963 |
Target: 5'- gGcgGGGcAGAgCCUGGCCGccgucACGuCCCUg -3' miRNA: 3'- aCuaCCU-UCU-GGACCGGC-----UGUuGGGG- -5' |
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28775 | 3' | -55.2 | NC_006146.1 | + | 69979 | 0.66 | 0.947963 |
Target: 5'- gGAUGGccAAGAacagcacGGUCGGgGACCCCa -3' miRNA: 3'- aCUACC--UUCUgga----CCGGCUgUUGGGG- -5' |
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28775 | 3' | -55.2 | NC_006146.1 | + | 59587 | 0.66 | 0.947963 |
Target: 5'- aGGUGGc-GAUCUGGagggCGGCGuCCCCc -3' miRNA: 3'- aCUACCuuCUGGACCg---GCUGUuGGGG- -5' |
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28775 | 3' | -55.2 | NC_006146.1 | + | 42880 | 0.66 | 0.947963 |
Target: 5'- cUGGUGGGAGGCgaaggggGGCaCGuCcuCCCCa -3' miRNA: 3'- -ACUACCUUCUGga-----CCG-GCuGuuGGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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