miRNA display CGI


Results 1 - 20 of 286 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28775 3' -55.2 NC_006146.1 + 523 0.66 0.938986
Target:  5'- ---gGGGAGGCCcGGCCuccacacACGGCCUCu -3'
miRNA:   3'- acuaCCUUCUGGaCCGGc------UGUUGGGG- -5'
28775 3' -55.2 NC_006146.1 + 897 0.69 0.817223
Target:  5'- cGggGGAAGGCCgcgcGCCGccccccGgGACCCCg -3'
miRNA:   3'- aCuaCCUUCUGGac--CGGC------UgUUGGGG- -5'
28775 3' -55.2 NC_006146.1 + 1454 0.66 0.938986
Target:  5'- ---gGGGAGGCCcGGCCuccacacACGGCCUCu -3'
miRNA:   3'- acuaCCUUCUGGaCCGGc------UGUUGGGG- -5'
28775 3' -55.2 NC_006146.1 + 1829 0.69 0.817223
Target:  5'- cGggGGAAGGCCgcgcGCCGccccccGgGACCCCg -3'
miRNA:   3'- aCuaCCUUCUGGac--CGGC------UgUUGGGG- -5'
28775 3' -55.2 NC_006146.1 + 2386 0.66 0.938986
Target:  5'- ---gGGGAGGCCcGGCCuccacacACGGCCUCu -3'
miRNA:   3'- acuaCCUUCUGGaCCGGc------UGUUGGGG- -5'
28775 3' -55.2 NC_006146.1 + 2490 0.67 0.900158
Target:  5'- cGggGGcAGGCagCUGGCCGACGAgCUg -3'
miRNA:   3'- aCuaCCuUCUG--GACCGGCUGUUgGGg -5'
28775 3' -55.2 NC_006146.1 + 2761 0.69 0.817223
Target:  5'- cGggGGAAGGCCgcgcGCCGccccccGgGACCCCg -3'
miRNA:   3'- aCuaCCUUCUGGac--CGGC------UgUUGGGG- -5'
28775 3' -55.2 NC_006146.1 + 3318 0.66 0.938986
Target:  5'- ---gGGGAGGCCcGGCCuccacacACGGCCUCu -3'
miRNA:   3'- acuaCCUUCUGGaCCGGc------UGUUGGGG- -5'
28775 3' -55.2 NC_006146.1 + 3693 0.69 0.817223
Target:  5'- cGggGGAAGGCCgcgcGCCGccccccGgGACCCCg -3'
miRNA:   3'- aCuaCCUUCUGGac--CGGC------UgUUGGGG- -5'
28775 3' -55.2 NC_006146.1 + 4523 0.69 0.817223
Target:  5'- cGggGGguGACCaucucgGuGCCGGCAGCCgCCg -3'
miRNA:   3'- aCuaCCuuCUGGa-----C-CGGCUGUUGG-GG- -5'
28775 3' -55.2 NC_006146.1 + 10667 0.66 0.952105
Target:  5'- gGAcgGGGAGGCCcgGGgCGAU-ACCCg -3'
miRNA:   3'- aCUa-CCUUCUGGa-CCgGCUGuUGGGg -5'
28775 3' -55.2 NC_006146.1 + 11916 0.72 0.664295
Target:  5'- cGGUGGAGcACCUGGUCuuuGCGGCCUCc -3'
miRNA:   3'- aCUACCUUcUGGACCGGc--UGUUGGGG- -5'
28775 3' -55.2 NC_006146.1 + 13260 0.66 0.934147
Target:  5'- ---aGGggGaACCaggGGaCCGGC-GCCCCa -3'
miRNA:   3'- acuaCCuuC-UGGa--CC-GGCUGuUGGGG- -5'
28775 3' -55.2 NC_006146.1 + 13632 0.67 0.900158
Target:  5'- ---aGGAGGcCCUGGUCcccaGCAGCCUCu -3'
miRNA:   3'- acuaCCUUCuGGACCGGc---UGUUGGGG- -5'
28775 3' -55.2 NC_006146.1 + 13719 0.66 0.938986
Target:  5'- ---cGGGuccaccAGGCC-GGCCGGaggGACCCCg -3'
miRNA:   3'- acuaCCU------UCUGGaCCGGCUg--UUGGGG- -5'
28775 3' -55.2 NC_006146.1 + 13833 0.66 0.938986
Target:  5'- ---cGGGuccaucAGGCC-GGCCGGaggGACCCCg -3'
miRNA:   3'- acuaCCU------UCUGGaCCGGCUg--UUGGGG- -5'
28775 3' -55.2 NC_006146.1 + 14361 0.67 0.929072
Target:  5'- aGuUGGcGGGCCUGucaGACAGCCCUg -3'
miRNA:   3'- aCuACCuUCUGGACcggCUGUUGGGG- -5'
28775 3' -55.2 NC_006146.1 + 14553 0.67 0.918211
Target:  5'- --cUGGAgcugcuGGGCCgcuuucgGGgCGugAGCCCCa -3'
miRNA:   3'- acuACCU------UCUGGa------CCgGCugUUGGGG- -5'
28775 3' -55.2 NC_006146.1 + 15030 0.66 0.934147
Target:  5'- ---gGGAGGggcGCCUGGCC-AgGGCCCg -3'
miRNA:   3'- acuaCCUUC---UGGACCGGcUgUUGGGg -5'
28775 3' -55.2 NC_006146.1 + 15300 0.72 0.684512
Target:  5'- aGggGGAGGAgg-GGCCGGaggcCAGCCCCg -3'
miRNA:   3'- aCuaCCUUCUggaCCGGCU----GUUGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.