miRNA display CGI


Results 1 - 20 of 32 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28776 5' -56.3 NC_006146.1 + 95055 0.66 0.927219
Target:  5'- -gACaugGGGGCUCCcacucguggUGGcagCUGugGUGGg -3'
miRNA:   3'- aaUGa--CCCUGAGG---------ACCa--GGCugCACC- -5'
28776 5' -56.3 NC_006146.1 + 80566 0.66 0.927219
Target:  5'- -cACUGGGACUCCUcGGUCUu------ -3'
miRNA:   3'- aaUGACCCUGAGGA-CCAGGcugcacc -5'
28776 5' -56.3 NC_006146.1 + 141201 0.66 0.910451
Target:  5'- aUACcaGGGGCUCCUGGggggaaCUGGgcaGUGGa -3'
miRNA:   3'- aAUGa-CCCUGAGGACCa-----GGCUg--CACC- -5'
28776 5' -56.3 NC_006146.1 + 44813 0.66 0.910451
Target:  5'- aUACUGGGAcCUCUguagGGggCCGGCGc-- -3'
miRNA:   3'- aAUGACCCU-GAGGa---CCa-GGCUGCacc -5'
28776 5' -56.3 NC_006146.1 + 58685 0.66 0.904399
Target:  5'- ----cGGGACgagcCCUGGUCgGAC-UGGu -3'
miRNA:   3'- aaugaCCCUGa---GGACCAGgCUGcACC- -5'
28776 5' -56.3 NC_006146.1 + 166825 0.66 0.904399
Target:  5'- gUGCUGucGACgcggCCcgGGUCCG-CGUGGa -3'
miRNA:   3'- aAUGACc-CUGa---GGa-CCAGGCuGCACC- -5'
28776 5' -56.3 NC_006146.1 + 12878 0.66 0.89619
Target:  5'- -gGCUGGGcaggccgggucucgGgUCUgggGGUCUGugGUGGu -3'
miRNA:   3'- aaUGACCC--------------UgAGGa--CCAGGCugCACC- -5'
28776 5' -56.3 NC_006146.1 + 22111 0.66 0.89619
Target:  5'- -gGCUGGGcaggccgggucucgGgUCUgggGGUCUGugGUGGu -3'
miRNA:   3'- aaUGACCC--------------UgAGGa--CCAGGCugCACC- -5'
28776 5' -56.3 NC_006146.1 + 25189 0.66 0.89619
Target:  5'- -gGCUGGGcaggccgggucucgGgUCUgggGGUCUGugGUGGu -3'
miRNA:   3'- aaUGACCC--------------UgAGGa--CCAGGCugCACC- -5'
28776 5' -56.3 NC_006146.1 + 28267 0.66 0.89619
Target:  5'- -gGCUGGGcaggccgggucucgGgUCUgggGGUCUGugGUGGu -3'
miRNA:   3'- aaUGACCC--------------UgAGGa--CCAGGCugCACC- -5'
28776 5' -56.3 NC_006146.1 + 19033 0.66 0.89619
Target:  5'- -gGCUGGGcaggccgggucucgGgUCUgggGGUCUGugGUGGu -3'
miRNA:   3'- aaUGACCC--------------UgAGGa--CCAGGCugCACC- -5'
28776 5' -56.3 NC_006146.1 + 113978 0.67 0.891612
Target:  5'- gUGCccgGGGGCUCCgcguuguugaaGGagCUGGCGUGGa -3'
miRNA:   3'- aAUGa--CCCUGAGGa----------CCa-GGCUGCACC- -5'
28776 5' -56.3 NC_006146.1 + 33731 0.67 0.891612
Target:  5'- --uCUGGaGCUCCUccGGUCCGGugggUGUGGu -3'
miRNA:   3'- aauGACCcUGAGGA--CCAGGCU----GCACC- -5'
28776 5' -56.3 NC_006146.1 + 15956 0.67 0.890949
Target:  5'- -gGCUGGGcaggccggucucgGgUCUgggGGUCUGugGUGGu -3'
miRNA:   3'- aaUGACCC-------------UgAGGa--CCAGGCugCACC- -5'
28776 5' -56.3 NC_006146.1 + 36370 0.67 0.884884
Target:  5'- --cCUGGGACgaUCCUGGacaUCUGAUGagaUGGa -3'
miRNA:   3'- aauGACCCUG--AGGACC---AGGCUGC---ACC- -5'
28776 5' -56.3 NC_006146.1 + 144276 0.67 0.877938
Target:  5'- cUACUuuuaGGGGCUCCUGGggggaaCUGGgcaGUGGa -3'
miRNA:   3'- aAUGA----CCCUGAGGACCa-----GGCUg--CACC- -5'
28776 5' -56.3 NC_006146.1 + 150432 0.67 0.877938
Target:  5'- cUACUuuuaGGGGCUCCUGGggggaaCUGGgcaGUGGa -3'
miRNA:   3'- aAUGA----CCCUGAGGACCa-----GGCUg--CACC- -5'
28776 5' -56.3 NC_006146.1 + 153510 0.67 0.877938
Target:  5'- cUACUuuuaGGGGCUCCUGGggggaaCUGGgcaGUGGa -3'
miRNA:   3'- aAUGA----CCCUGAGGACCa-----GGCUg--CACC- -5'
28776 5' -56.3 NC_006146.1 + 156588 0.67 0.877938
Target:  5'- cUACUuuuaGGGGCUCCUGGggggaaCUGGgcaGUGGa -3'
miRNA:   3'- aAUGA----CCCUGAGGACCa-----GGCUg--CACC- -5'
28776 5' -56.3 NC_006146.1 + 147354 0.67 0.877938
Target:  5'- cUACUuuuaGGGGCUCCUGGggggaaCUGGgcaGUGGa -3'
miRNA:   3'- aAUGA----CCCUGAGGACCa-----GGCUg--CACC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.