miRNA display CGI


Results 21 - 40 of 153 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
28777 3' -61.4 NC_006146.1 + 168525 0.73 0.287696
Target:  5'- gGAGGCCGggCcUCCccuGGGGGCCuCGGGGg -3'
miRNA:   3'- -CUCCGGUa-GuAGGu--CCUCCGG-GCCCU- -5'
28777 3' -61.4 NC_006146.1 + 61925 0.73 0.321537
Target:  5'- cGGGCCAUCAggggcUCCAGGGcccuGGuCCaCGGGAc -3'
miRNA:   3'- cUCCGGUAGU-----AGGUCCU----CC-GG-GCCCU- -5'
28777 3' -61.4 NC_006146.1 + 93695 0.72 0.335883
Target:  5'- gGAGGCaua-GUCCAGGAGGCCgUGGaGAc -3'
miRNA:   3'- -CUCCGguagUAGGUCCUCCGG-GCC-CU- -5'
28777 3' -61.4 NC_006146.1 + 78816 0.72 0.335883
Target:  5'- gGAGGCCcacgCGUCCAGGcAGccguGUCCGGGGg -3'
miRNA:   3'- -CUCCGGua--GUAGGUCC-UC----CGGGCCCU- -5'
28777 3' -61.4 NC_006146.1 + 1788 0.72 0.343229
Target:  5'- cGGGCCcuccccgaCAUCCAGGGacuGGCCgCGGGAg -3'
miRNA:   3'- cUCCGGua------GUAGGUCCU---CCGG-GCCCU- -5'
28777 3' -61.4 NC_006146.1 + 168574 0.72 0.343229
Target:  5'- cGGGGCCcggcgCGUgCCGGGGGaCCCGGGGg -3'
miRNA:   3'- -CUCCGGua---GUA-GGUCCUCcGGGCCCU- -5'
28777 3' -61.4 NC_006146.1 + 169506 0.72 0.343229
Target:  5'- cGGGGCCcggcgCGUgCCGGGGGaCCCGGGGg -3'
miRNA:   3'- -CUCCGGua---GUA-GGUCCUCcGGGCCCU- -5'
28777 3' -61.4 NC_006146.1 + 170437 0.72 0.343229
Target:  5'- cGGGGCCcggcgCGUgCCGGGGGaCCCGGGGg -3'
miRNA:   3'- -CUCCGGua---GUA-GGUCCUCcGGGCCCU- -5'
28777 3' -61.4 NC_006146.1 + 3652 0.72 0.343229
Target:  5'- cGGGCCcuccccgaCAUCCAGGGacuGGCCgCGGGAg -3'
miRNA:   3'- cUCCGGua------GUAGGUCCU---CCGG-GCCCU- -5'
28777 3' -61.4 NC_006146.1 + 856 0.72 0.343229
Target:  5'- cGGGCCcuccccgaCAUCCAGGGacuGGCCgCGGGAg -3'
miRNA:   3'- cUCCGGua------GUAGGUCCU---CCGG-GCCCU- -5'
28777 3' -61.4 NC_006146.1 + 2720 0.72 0.343229
Target:  5'- cGGGCCcuccccgaCAUCCAGGGacuGGCCgCGGGAg -3'
miRNA:   3'- cUCCGGua------GUAGGUCCU---CCGG-GCCCU- -5'
28777 3' -61.4 NC_006146.1 + 117983 0.72 0.350691
Target:  5'- cGAGGCCAgcgCccCCGGGGGGCCacgcagaccaugCGGGGc -3'
miRNA:   3'- -CUCCGGUa--GuaGGUCCUCCGG------------GCCCU- -5'
28777 3' -61.4 NC_006146.1 + 168482 0.72 0.358267
Target:  5'- -cGGCCucaCGUCCacggucGGGGGGCCgGGGAc -3'
miRNA:   3'- cuCCGGua-GUAGG------UCCUCCGGgCCCU- -5'
28777 3' -61.4 NC_006146.1 + 101633 0.72 0.365957
Target:  5'- uGGGCCAgcugCAUCUucgAGGAGGaCCCGGa- -3'
miRNA:   3'- cUCCGGUa---GUAGG---UCCUCC-GGGCCcu -5'
28777 3' -61.4 NC_006146.1 + 26112 0.72 0.365957
Target:  5'- gGAGGCCAcaauUgGUCCAuGGAaaGGCaCCGGGGc -3'
miRNA:   3'- -CUCCGGU----AgUAGGU-CCU--CCG-GGCCCU- -5'
28777 3' -61.4 NC_006146.1 + 76732 0.71 0.37376
Target:  5'- cGAGGCCGaCAgcuUCguGGAGGCCCacGGGc -3'
miRNA:   3'- -CUCCGGUaGU---AGguCCUCCGGG--CCCu -5'
28777 3' -61.4 NC_006146.1 + 96441 0.71 0.381675
Target:  5'- aAGGCCAUCGUgggCCAuGGGGGCa-GGGAc -3'
miRNA:   3'- cUCCGGUAGUA---GGU-CCUCCGggCCCU- -5'
28777 3' -61.4 NC_006146.1 + 55244 0.71 0.389701
Target:  5'- cAGGUaCGUCGcCCGGGcGGCCCGGGc -3'
miRNA:   3'- cUCCG-GUAGUaGGUCCuCCGGGCCCu -5'
28777 3' -61.4 NC_006146.1 + 7914 0.71 0.389701
Target:  5'- gGAGGCCGagGagaAGGGGGaCCCGGGAa -3'
miRNA:   3'- -CUCCGGUagUaggUCCUCC-GGGCCCU- -5'
28777 3' -61.4 NC_006146.1 + 167245 0.71 0.397018
Target:  5'- -cGGCCAgUCccuggauGUCgGGGAgGGCCCGGGGc -3'
miRNA:   3'- cuCCGGU-AG-------UAGgUCCU-CCGGGCCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.