Results 1 - 20 of 38 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
28777 | 5' | -55.6 | NC_006146.1 | + | 169178 | 0.68 | 0.865533 |
Target: 5'- cCUGCAGGGgGggCcgGCGGGGCgUCc -3' miRNA: 3'- cGACGUCCUgCaaGa-CGUCCUGgAGc -5' |
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28777 | 5' | -55.6 | NC_006146.1 | + | 168246 | 0.68 | 0.865533 |
Target: 5'- cCUGCAGGGgGggCcgGCGGGGCgUCc -3' miRNA: 3'- cGACGUCCUgCaaGa-CGUCCUGgAGc -5' |
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28777 | 5' | -55.6 | NC_006146.1 | + | 167314 | 0.68 | 0.865533 |
Target: 5'- cCUGCAGGGgGggCcgGCGGGGCgUCc -3' miRNA: 3'- cGACGUCCUgCaaGa-CGUCCUGgAGc -5' |
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28777 | 5' | -55.6 | NC_006146.1 | + | 165755 | 0.66 | 0.929072 |
Target: 5'- --aGCAGGGCG-UCUcGCAGGGCg--- -3' miRNA: 3'- cgaCGUCCUGCaAGA-CGUCCUGgagc -5' |
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28777 | 5' | -55.6 | NC_006146.1 | + | 155235 | 0.72 | 0.643975 |
Target: 5'- gGCUGUGGGucaGggCgUGCAGGugCUCGg -3' miRNA: 3'- -CGACGUCCug-CaaG-ACGUCCugGAGC- -5' |
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28777 | 5' | -55.6 | NC_006146.1 | + | 150151 | 0.67 | 0.912428 |
Target: 5'- uGCUGCuuguccAGGAUGgUCUuuuggcGCGGGuCCUCGc -3' miRNA: 3'- -CGACG------UCCUGCaAGA------CGUCCuGGAGC- -5' |
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28777 | 5' | -55.6 | NC_006146.1 | + | 149987 | 0.66 | 0.918212 |
Target: 5'- cCUGCAGGuCGgccggaCU-CAGGGCCUCc -3' miRNA: 3'- cGACGUCCuGCaa----GAcGUCCUGGAGc -5' |
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28777 | 5' | -55.6 | NC_006146.1 | + | 149825 | 0.7 | 0.753455 |
Target: 5'- gGCUcCGGGugGUgugggCgGcCAGGGCCUCGg -3' miRNA: 3'- -CGAcGUCCugCAa----GaC-GUCCUGGAGC- -5' |
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28777 | 5' | -55.6 | NC_006146.1 | + | 147566 | 0.72 | 0.664295 |
Target: 5'- cGCUG-AGGuCGgUCUGCAGGGCCa-- -3' miRNA: 3'- -CGACgUCCuGCaAGACGUCCUGGagc -5' |
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28777 | 5' | -55.6 | NC_006146.1 | + | 132099 | 0.67 | 0.906409 |
Target: 5'- nGCUGCA-GAUGUgcaccCcGCAGGACUUCc -3' miRNA: 3'- -CGACGUcCUGCAa----GaCGUCCUGGAGc -5' |
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28777 | 5' | -55.6 | NC_006146.1 | + | 132063 | 0.76 | 0.4569 |
Target: 5'- cGCUGCuGGACGUgagCUGCcccaggcucAGGGCCUgGc -3' miRNA: 3'- -CGACGuCCUGCAa--GACG---------UCCUGGAgC- -5' |
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28777 | 5' | -55.6 | NC_006146.1 | + | 130814 | 0.78 | 0.346894 |
Target: 5'- aGCUGCAGcACGcgCUGCAGGcCCUCc -3' miRNA: 3'- -CGACGUCcUGCaaGACGUCCuGGAGc -5' |
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28777 | 5' | -55.6 | NC_006146.1 | + | 123622 | 1.1 | 0.003003 |
Target: 5'- gGCUGCAGGACGUUCUGCAGGACCUCGu -3' miRNA: 3'- -CGACGUCCUGCAAGACGUCCUGGAGC- -5' |
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28777 | 5' | -55.6 | NC_006146.1 | + | 123326 | 0.71 | 0.714495 |
Target: 5'- ---cCGGGACG-UCUGCGGGGCCgUCa -3' miRNA: 3'- cgacGUCCUGCaAGACGUCCUGG-AGc -5' |
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28777 | 5' | -55.6 | NC_006146.1 | + | 115804 | 0.7 | 0.762953 |
Target: 5'- aGCUGaaCAGGAUGUUCUcCgagAGGAUCUCGu -3' miRNA: 3'- -CGAC--GUCCUGCAAGAcG---UCCUGGAGC- -5' |
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28777 | 5' | -55.6 | NC_006146.1 | + | 115402 | 0.67 | 0.900159 |
Target: 5'- cGCgUGCAGGAgGcagCUgGCGgccGGGCCUCGu -3' miRNA: 3'- -CG-ACGUCCUgCaa-GA-CGU---CCUGGAGC- -5' |
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28777 | 5' | -55.6 | NC_006146.1 | + | 114352 | 0.68 | 0.861016 |
Target: 5'- cCUGgAGuaGACGUuaaacaggagaaucuUCUGUAGGACCUCc -3' miRNA: 3'- cGACgUC--CUGCA---------------AGACGUCCUGGAGc -5' |
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28777 | 5' | -55.6 | NC_006146.1 | + | 112114 | 0.68 | 0.842227 |
Target: 5'- gGgUGgAGGugGUgCUGguGGugGCCUCGg -3' miRNA: 3'- -CgACgUCCugCAaGACguCC--UGGAGC- -5' |
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28777 | 5' | -55.6 | NC_006146.1 | + | 100712 | 0.66 | 0.918212 |
Target: 5'- cGCUGCGGGG-GUgggUGUGGGACCg-- -3' miRNA: 3'- -CGACGUCCUgCAag-ACGUCCUGGagc -5' |
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28777 | 5' | -55.6 | NC_006146.1 | + | 96810 | 0.66 | 0.93113 |
Target: 5'- aGCUGCaggcuucccuggugGGGACGggCggGCAGGuugggcccgcuucaGCCUCu -3' miRNA: 3'- -CGACG--------------UCCUGCaaGa-CGUCC--------------UGGAGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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